Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5094

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
5,647,153	+				+0.3
5,647,153	+				+0.9
5,647,326	+				-0.5
5,647,327	-				-0.2
5,647,329	-				-2.0
5,647,409	+				+0.7
5,647,410	-				-2.0
5,647,531	+				-2.0
5,647,767	-				-1.5
5,647,826	+				-0.1
5,647,827	-				-0.7
5,647,827	-				-1.3
5,647,833	-				-0.3
5,647,949	+				-0.7
5,648,236	-		Pf1N1B4_5094	0.39	-0.7
5,648,547	+		Pf1N1B4_5094	0.77	-0.7
5,648,548	-		Pf1N1B4_5094	0.77	-1.4
5,648,548	-		Pf1N1B4_5094	0.77	+0.9
5,648,667	+				-0.1
5,648,741	-				+3.3
5,648,952	+		Pf1N1B4_5095	0.24	-0.2
5,648,984	-		Pf1N1B4_5095	0.30	-3.1
5,649,200	-		Pf1N1B4_5095	0.68	-1.4
5,649,200	-		Pf1N1B4_5095	0.68	-2.5
5,649,205	-		Pf1N1B4_5095	0.69	-1.1
5,649,385	+				-0.9
5,649,385	+				+0.2
5,649,385	+				-1.3
5,649,386	-				-0.2
5,649,386	-				-2.3
5,649,427	+				+0.2
5,649,487	+				-0.9