Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5092
Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 1-ethyl-3-methylimidazolium lysine 5 mM |
|---|---|---|---|---|---|
| remove | |||||
| 5,643,331 | + | Pf1N1B4_5091 | 0.41 | -1.3 | |
| 5,643,331 | + | Pf1N1B4_5091 | 0.41 | -1.7 | |
| 5,643,331 | + | Pf1N1B4_5091 | 0.41 | -2.0 | |
| 5,643,532 | + | Pf1N1B4_5091 | 0.55 | -0.3 | |
| 5,643,533 | - | Pf1N1B4_5091 | 0.55 | -0.9 | |
| 5,643,757 | + | -0.7 | |||
| 5,644,060 | + | -0.6 | |||
| 5,644,114 | + | -0.2 | |||
| 5,644,114 | + | -0.7 | |||
| 5,644,548 | + | Pf1N1B4_5092 | 0.27 | +0.1 | |
| 5,645,192 | - | Pf1N1B4_5092 | 0.88 | +2.1 | |
| 5,645,200 | - | Pf1N1B4_5092 | 0.89 | -0.5 | |
| 5,645,848 | - | Pf1N1B4_5093 | 0.36 | -1.0 | |
| 5,645,889 | + | Pf1N1B4_5093 | 0.39 | -0.3 | |
| 5,646,267 | - | Pf1N1B4_5093 | 0.65 | -2.0 | |
| 5,646,267 | - | Pf1N1B4_5093 | 0.65 | -0.0 | |
| 5,646,270 | + | Pf1N1B4_5093 | 0.65 | +0.6 | |
| 5,646,270 | + | Pf1N1B4_5093 | 0.65 | -0.6 | |
| 5,646,271 | - | +0.3 | |||
| 5,646,271 | - | Pf1N1B4_5093 | 0.65 | +1.3 |
Or see this region's nucleotide sequence