Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5087

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
5,636,355	-		Pf1N1B4_5085	0.86	-2.5
5,636,471	+				+0.3
5,636,549	+				-2.3
5,636,549	+				+0.3
5,636,550	-				-0.7
5,636,612	-				-0.3
5,637,127	+		Pf1N1B4_5086	0.77	-0.1
5,637,420	+				-0.1
5,637,608	+		Pf1N1B4_5087	0.27	-0.4
5,637,627	+		Pf1N1B4_5087	0.29	-1.3
5,637,627	+		Pf1N1B4_5087	0.29	+1.5
5,637,627	+		Pf1N1B4_5087	0.29	+1.6
5,637,627	+		Pf1N1B4_5087	0.29	+0.3
5,637,628	-		Pf1N1B4_5087	0.29	-0.5
5,637,628	-		Pf1N1B4_5087	0.29	-0.1
5,637,702	+		Pf1N1B4_5087	0.36	+0.3
5,637,702	+		Pf1N1B4_5087	0.36	-0.8
5,637,703	-		Pf1N1B4_5087	0.36	-2.0
5,637,703	-		Pf1N1B4_5087	0.36	+0.9
5,637,899	-		Pf1N1B4_5087	0.54	+0.9
5,637,934	-		Pf1N1B4_5087	0.57	-0.3
5,638,345	-				-0.7
5,638,345	-				-1.1
5,638,372	-				-1.5
5,638,372	-				+0.5
5,638,374	+				+0.3
5,638,995	+		Pf1N1B4_5088	0.54	-1.3