Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4962

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
5,501,824	-				+0.4
5,501,824	-				+1.1
5,501,824	-				-2.5
5,501,835	-				+0.5
5,502,057	+				-0.7
5,502,268	-		Pf1N1B4_4961	0.60	+0.3
5,502,377	-		Pf1N1B4_4961	0.75	-1.0
5,502,436	-		Pf1N1B4_4961	0.83	-0.2
5,502,459	+		Pf1N1B4_4961	0.87	+0.6
5,502,459	+		Pf1N1B4_4961	0.87	-0.7
5,502,537	+				-0.7
5,502,537	+				-0.7
5,502,537	+				-1.3
5,502,537	+				+1.9
5,502,538	-				+0.1
5,502,538	-				+0.9
5,502,538	-				+0.1
5,502,557	+				-0.5
5,502,657	+				+0.3
5,502,686	-				-0.7
5,502,729	-				-2.3
5,502,747	+				-0.5
5,502,814	+				+0.7
5,502,868	+				+1.0
5,502,868	+				+1.9
5,502,961	-		Pf1N1B4_4962	0.16	-0.5
5,503,613	+				-0.7
5,503,613	+		Pf1N1B4_4962	0.66	-1.4
5,503,614	-		Pf1N1B4_4962	0.66	-2.0
5,503,681	+		Pf1N1B4_4962	0.71	-0.7
5,503,681	+		Pf1N1B4_4962	0.71	-0.9
5,503,682	-		Pf1N1B4_4962	0.71	-1.4
5,503,682	-		Pf1N1B4_4962	0.71	-1.7
5,503,682	-		Pf1N1B4_4962	0.71	-1.1
5,503,884	+		Pf1N1B4_4962	0.87	-0.7
5,504,076	+				-0.7
5,504,076	+				+1.9
5,504,198	+				-1.3
5,504,198	+				-0.0
5,504,198	+				-2.0
5,504,199	-				+1.9
5,504,199	-				-1.3
5,504,199	-				-0.7
5,504,199	-				+0.3
5,504,205	+				-0.4
5,504,205	+				-2.0
5,504,205	+				-0.5
5,504,206	-				-2.0
5,504,206	-				+0.1
5,504,206	-				-0.0
5,504,211	+				-0.7
5,504,416	-		Pf1N1B4_4963	0.13	-0.3
5,504,659	-		Pf1N1B4_4963	0.38	-1.6
5,504,659	-		Pf1N1B4_4963	0.38	+0.5
5,504,835	+		Pf1N1B4_4963	0.57	-0.2
5,504,836	-		Pf1N1B4_4963	0.57	-1.3
5,504,929	-		Pf1N1B4_4963	0.66	+0.3
5,504,929	-		Pf1N1B4_4963	0.66	+1.1
5,505,019	-		Pf1N1B4_4963	0.76	-0.4