Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4952

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
5,487,712	+				-1.3
5,487,713	-				-0.3
5,487,713	-				-0.3
5,487,716	+				-0.4
5,487,716	+				+1.3
5,487,716	+				+0.5
5,487,716	+				-0.7
5,487,716	+				+0.3
5,487,716	+				-0.8
5,487,717	-				-0.6
5,487,717	-				-0.3
5,487,717	-				-0.5
5,487,786	+		Pf1N1B4_4951	0.21	-1.3
5,487,787	-				+0.7
5,487,794	+				-1.5
5,487,813	+		Pf1N1B4_4951	0.28	+1.0
5,487,814	-		Pf1N1B4_4951	0.28	-0.1
5,487,814	-		Pf1N1B4_4951	0.28	+1.1
5,487,968	-		Pf1N1B4_4951	0.71	-0.3
5,487,970	+		Pf1N1B4_4951	0.71	-1.1
5,487,970	+		Pf1N1B4_4951	0.71	-0.2
5,488,073	+				+0.1
5,488,073	+				+1.9
5,488,074	-				-0.8
5,488,074	-				-1.3
5,488,076	+				-0.3
5,488,226	-				-0.4
5,488,363	+				+0.3
5,488,395	+				+0.3
5,488,395	+				-1.7
5,488,395	+				+0.1
5,488,396	-				-0.9
5,488,396	-				-1.3
5,488,412	-				-0.7
5,488,585	+				+0.3
5,488,834	-		Pf1N1B4_4952	0.14	-0.9
5,489,560	-		Pf1N1B4_4952	0.64	-1.0
5,489,779	-		Pf1N1B4_4952	0.80	-2.0
5,489,779	-		Pf1N1B4_4952	0.80	-0.3
5,490,191	-				+0.5
5,490,192	+				+0.9
5,490,192	+				-0.3
5,490,193	-				+0.9
5,490,196	+				+0.9
5,490,393	+		Pf1N1B4_4953	0.17	-0.1