Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4906

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
5,433,460	+		Pf1N1B4_4905	0.70	+0.5
5,433,698	-		Pf1N1B4_4905	0.78	-1.9
5,433,755	+				+1.3
5,433,755	+		Pf1N1B4_4905	0.80	-1.3
5,433,770	+		Pf1N1B4_4905	0.80	-0.4
5,433,771	-		Pf1N1B4_4905	0.80	+0.9
5,433,818	+		Pf1N1B4_4905	0.82	-0.5
5,433,859	+		Pf1N1B4_4905	0.83	-0.4
5,433,980	+		Pf1N1B4_4905	0.87	-1.4
5,433,980	+		Pf1N1B4_4905	0.87	-0.1
5,434,307	+				+0.7
5,434,307	+				+1.6
5,434,478	-				-0.4
5,434,582	+		Pf1N1B4_4906	0.11	+1.3
5,434,582	+		Pf1N1B4_4906	0.11	-1.7
5,434,583	-		Pf1N1B4_4906	0.11	-2.9
5,434,583	-		Pf1N1B4_4906	0.11	-2.0
5,434,633	+		Pf1N1B4_4906	0.14	-1.8
5,434,757	-		Pf1N1B4_4906	0.21	-1.4
5,434,911	+		Pf1N1B4_4906	0.30	-1.0
5,434,942	+		Pf1N1B4_4906	0.32	-1.3
5,434,943	-				-0.3
5,435,123	-				+0.3
5,435,196	-		Pf1N1B4_4906	0.47	-0.9
5,435,201	-		Pf1N1B4_4906	0.47	-1.6
5,435,239	+				-0.7
5,435,459	-		Pf1N1B4_4906	0.62	-0.7
5,435,554	+		Pf1N1B4_4906	0.68	-1.3
5,435,569	+		Pf1N1B4_4906	0.69	+0.3
5,435,653	+				-0.7
5,435,702	-		Pf1N1B4_4906	0.77	-2.3
5,435,980	+				-0.5
5,435,980	+				-1.1
5,435,980	+				-2.3
5,435,981	-				-0.7
5,435,981	-				-1.0
5,436,057	-				-2.0
5,436,057	-				+0.8
5,436,207	-				-0.4
5,436,207	-				+0.3
5,436,275	+				+0.3
5,436,275	+				-0.2
5,436,575	+				+0.9
5,436,720	-		Pf1N1B4_4907	0.28	+0.3
5,436,724	-		Pf1N1B4_4907	0.28	-0.1
5,436,893	+		Pf1N1B4_4907	0.38	-0.0
5,436,894	-		Pf1N1B4_4907	0.38	-0.5
5,437,070	+		Pf1N1B4_4907	0.47	-0.3