Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4468 and Pf1N1B4_4469 are separated by 580 nucleotides Pf1N1B4_4469 and Pf1N1B4_4470 are separated by 11 nucleotides Pf1N1B4_4470 and Pf1N1B4_4471 are separated by 8 nucleotides
Pf1N1B4_4468 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 4,930,468 to 4,930,674
_4468
Pf1N1B4_4469 - FIG074102: hypothetical protein, at 4,931,255 to 4,931,530
_4469
Pf1N1B4_4470 - Cobalt-zinc-cadmium resistance protein CzcD, at 4,931,542 to 4,932,459
_4470
Pf1N1B4_4471 - putative cytochrome p450 oxidoreductase, at 4,932,468 to 4,933,574
_4471
Position (kb)
4931
4932
4933 Strain fitness (log2 ratio)
-2
-1
0
1 at 4930.757 kb on + strand at 4930.762 kb on - strand at 4930.902 kb on + strand at 4930.902 kb on + strand at 4930.903 kb on - strand at 4930.906 kb on - strand at 4930.906 kb on - strand at 4931.033 kb on + strand at 4931.039 kb on + strand at 4931.251 kb on - strand at 4931.255 kb on - strand at 4931.255 kb on - strand at 4931.529 kb on - strand at 4931.765 kb on - strand, within Pf1N1B4_4470 at 4931.853 kb on - strand, within Pf1N1B4_4470 at 4932.202 kb on + strand, within Pf1N1B4_4470 at 4932.678 kb on - strand, within Pf1N1B4_4471 at 4932.922 kb on - strand, within Pf1N1B4_4471
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 4,930,757 + +0.3 4,930,762 - +0.5 4,930,902 + -0.9 4,930,902 + -1.8 4,930,903 - -0.5 4,930,906 - -0.4 4,930,906 - -1.3 4,931,033 + +1.1 4,931,039 + -2.3 4,931,251 - -1.5 4,931,255 - -0.0 4,931,255 - +0.5 4,931,529 - +1.7 4,931,765 - Pf1N1B4_4470 0.24 +0.6 4,931,853 - Pf1N1B4_4470 0.34 +0.2 4,932,202 + Pf1N1B4_4470 0.72 -0.1 4,932,678 - Pf1N1B4_4471 0.19 +0.3 4,932,922 - Pf1N1B4_4471 0.41 -0.1
Or see this region's nucleotide sequence