Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4441

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
4,900,444	-				-0.9
4,900,444	-				-1.8
4,900,444	-				-1.0
4,900,625	+		Pf1N1B4_4440	0.14	+0.2
4,900,625	+		Pf1N1B4_4440	0.14	-0.5
4,900,626	-		Pf1N1B4_4440	0.14	-0.5
4,900,647	+		Pf1N1B4_4440	0.17	-0.5
4,900,648	-		Pf1N1B4_4440	0.18	-0.1
4,900,800	-		Pf1N1B4_4440	0.41	-0.8
4,900,984	-		Pf1N1B4_4440	0.68	+0.5
4,901,134	+				-0.7
4,901,236	+				+0.5
4,901,528	+		Pf1N1B4_4441	0.34	-1.1
4,901,555	+		Pf1N1B4_4441	0.40	-2.8
4,901,711	+		Pf1N1B4_4441	0.73	-2.7
4,901,711	+		Pf1N1B4_4441	0.73	-0.2
4,901,816	+				-0.1
4,901,816	+				-0.8
4,901,913	-				-0.5
4,901,913	-				+2.5
4,901,913	-				-0.1
4,901,913	-				-1.5
4,901,918	-				-0.3
4,901,918	-				-0.7
4,901,918	-				-0.5
4,901,918	-				+0.9
4,901,926	+				-0.7
4,901,937	+				+2.1
4,901,939	+				-0.5
4,901,939	+				-0.5
4,901,939	+				-0.7
4,901,940	-				-1.1
4,901,940	-				-0.5
4,901,975	-				+0.5
4,902,142	+		Pf1N1B4_4442	0.21	-0.9
4,902,142	+		Pf1N1B4_4442	0.21	-0.7
4,902,142	+		Pf1N1B4_4442	0.21	+0.5
4,902,142	+				+1.5
4,902,143	-		Pf1N1B4_4442	0.21	-0.8
4,902,143	-		Pf1N1B4_4442	0.21	-1.1
4,902,143	-		Pf1N1B4_4442	0.21	+0.9
4,902,143	-		Pf1N1B4_4442	0.21	-0.1
4,902,143	-		Pf1N1B4_4442	0.21	-1.0
4,902,143	-				-0.1
4,902,145	-		Pf1N1B4_4442	0.21	+0.5
4,902,262	+		Pf1N1B4_4442	0.34	-1.6
4,902,263	-		Pf1N1B4_4442	0.34	-0.5
4,902,289	+				-0.5
4,902,289	+		Pf1N1B4_4442	0.37	-1.5
4,902,478	+		Pf1N1B4_4442	0.58	-0.5
4,902,574	+		Pf1N1B4_4442	0.69	-0.8
4,902,775	+				+2.3
4,902,775	+				+2.1
4,902,776	-				+0.2
4,902,776	-				-0.3
4,902,776	-				-1.5