Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_436 and Pf1N1B4_437 are separated by 264 nucleotides
Pf1N1B4_436 - Cell division protein FtsH (EC 3.4.24.-), at 515,255 to 516,193
_436
Pf1N1B4_437 - hypothetical protein, at 516,458 to 516,589
_437
Position (kb) 516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 515.464 kb on - strand, within Pf1N1B4_436 at 515.464 kb on - strand, within Pf1N1B4_436 at 515.466 kb on + strand, within Pf1N1B4_436 at 515.467 kb on - strand at 515.635 kb on + strand, within Pf1N1B4_436 at 515.654 kb on + strand, within Pf1N1B4_436 at 515.655 kb on - strand, within Pf1N1B4_436 at 515.892 kb on + strand, within Pf1N1B4_436 at 515.892 kb on + strand, within Pf1N1B4_436 at 515.893 kb on - strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.951 kb on + strand, within Pf1N1B4_436 at 515.975 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.090 kb on + strand, within Pf1N1B4_436 at 516.090 kb on + strand, within Pf1N1B4_436 at 516.129 kb on + strand at 516.242 kb on - strand at 516.315 kb on + strand at 516.316 kb on - strand at 516.410 kb on + strand at 516.411 kb on - strand at 516.415 kb on - strand at 516.514 kb on + strand, within Pf1N1B4_437 at 516.514 kb on + strand, within Pf1N1B4_437 at 516.542 kb on + strand, within Pf1N1B4_437 at 516.542 kb on + strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.563 kb on + strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.602 kb on + strand at 516.602 kb on + strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.604 kb on + strand at 516.794 kb on - strand at 516.897 kb on + strand at 516.959 kb on + strand at 517.077 kb on + strand at 517.079 kb on + strand at 517.079 kb on + strand at 517.183 kb on - strand at 517.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 515,464 - Pf1N1B4_436 0.22 +0.4 515,464 - Pf1N1B4_436 0.22 -0.6 515,466 + Pf1N1B4_436 0.22 -1.6 515,467 - +0.8 515,635 + Pf1N1B4_436 0.40 -0.4 515,654 + Pf1N1B4_436 0.42 -0.6 515,655 - Pf1N1B4_436 0.43 -0.2 515,892 + Pf1N1B4_436 0.68 -1.3 515,892 + Pf1N1B4_436 0.68 -0.5 515,893 - Pf1N1B4_436 0.68 -1.1 515,917 + Pf1N1B4_436 0.71 -1.2 515,917 + Pf1N1B4_436 0.71 -0.7 515,917 + Pf1N1B4_436 0.71 +0.4 515,917 + Pf1N1B4_436 0.71 +0.5 515,918 - Pf1N1B4_436 0.71 -0.2 515,918 - Pf1N1B4_436 0.71 -0.2 515,918 - Pf1N1B4_436 0.71 +0.1 515,918 - Pf1N1B4_436 0.71 -0.7 515,951 + Pf1N1B4_436 0.74 -1.2 515,975 - Pf1N1B4_436 0.77 +0.2 516,029 - Pf1N1B4_436 0.82 -1.0 516,029 - Pf1N1B4_436 0.82 -0.8 516,029 - Pf1N1B4_436 0.82 -0.2 516,090 + Pf1N1B4_436 0.89 +0.6 516,090 + Pf1N1B4_436 0.89 -1.2 516,129 + +1.2 516,242 - +0.2 516,315 + -1.2 516,316 - -2.8 516,410 + -1.8 516,411 - -1.2 516,415 - +0.0 516,514 + Pf1N1B4_437 0.42 +0.1 516,514 + Pf1N1B4_437 0.42 +0.2 516,542 + Pf1N1B4_437 0.64 +1.8 516,542 + Pf1N1B4_437 0.64 -2.2 516,543 - Pf1N1B4_437 0.64 -0.5 516,543 - Pf1N1B4_437 0.64 +0.2 516,543 - Pf1N1B4_437 0.64 -0.8 516,563 + Pf1N1B4_437 0.80 -0.8 516,564 - Pf1N1B4_437 0.80 -1.5 516,564 - Pf1N1B4_437 0.80 +0.1 516,564 - Pf1N1B4_437 0.80 -0.7 516,564 - Pf1N1B4_437 0.80 -1.3 516,602 + +0.4 516,602 + -0.0 516,603 - -1.2 516,603 - +0.2 516,603 - -1.6 516,603 - -0.8 516,604 + -0.6 516,794 - +0.3 516,897 + +0.8 516,959 + -1.3 517,077 + +0.5 517,079 + -0.2 517,079 + -0.6 517,183 - +1.8 517,585 + -0.2
Or see this region's nucleotide sequence