Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4040

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
4,491,377	+		Pf1N1B4_4039	0.64	+1.4
4,491,377	+		Pf1N1B4_4039	0.64	+0.6
4,491,378	-		Pf1N1B4_4039	0.64	-0.5
4,491,378	-		Pf1N1B4_4039	0.64	-0.4
4,491,393	+		Pf1N1B4_4039	0.65	-0.4
4,491,393	+		Pf1N1B4_4039	0.65	-0.1
4,491,604	-		Pf1N1B4_4039	0.77	+1.6
4,491,628	-		Pf1N1B4_4039	0.78	+0.2
4,491,704	+		Pf1N1B4_4039	0.82	+1.7
4,491,704	+		Pf1N1B4_4039	0.82	+2.8
4,491,705	-		Pf1N1B4_4039	0.82	+1.2
4,491,713	-		Pf1N1B4_4039	0.83	+1.9
4,491,713	-		Pf1N1B4_4039	0.83	-0.2
4,491,716	-		Pf1N1B4_4039	0.83	+0.8
4,491,739	-		Pf1N1B4_4039	0.84	+0.3
4,491,816	+		Pf1N1B4_4039	0.88	-2.5
4,491,817	-		Pf1N1B4_4039	0.89	-0.5
4,491,817	-		Pf1N1B4_4039	0.89	+0.1
4,491,817	-		Pf1N1B4_4039	0.89	-0.4
4,491,828	+		Pf1N1B4_4039	0.89	-0.1
4,491,829	-		Pf1N1B4_4039	0.89	+0.3
4,491,987	+				-0.4
4,491,988	-				+0.2
4,492,000	-				+0.6
4,492,000	-				+0.2
4,492,025	+				+1.3
4,492,025	+				-0.1
4,492,026	-				-1.2
4,492,026	-				+0.3
4,492,026	-				-0.1
4,492,026	-				+0.6
4,492,048	-				-0.3
4,492,048	-				+2.2
4,492,048	-				-0.4
4,492,048	-				-0.4
4,492,079	-				-0.4
4,492,079	-				+0.0
4,492,079	-				+0.6
4,492,079	-				+0.2
4,492,079	-				-1.0
4,492,133	-				-0.1
4,492,296	+		Pf1N1B4_4040	0.30	+0.6
4,492,297	-		Pf1N1B4_4040	0.30	+0.6
4,492,350	+		Pf1N1B4_4040	0.38	+0.4
4,492,351	-		Pf1N1B4_4040	0.38	-0.2
4,492,396	+				+1.9
4,492,563	+		Pf1N1B4_4040	0.69	-1.2
4,492,585	+		Pf1N1B4_4040	0.73	+1.6
4,492,586	-		Pf1N1B4_4040	0.73	+0.4
4,492,761	+				+1.2
4,492,762	-				+1.5
4,492,853	-		Pf1N1B4_4041	0.18	-0.5
4,492,853	-		Pf1N1B4_4041	0.18	-1.3
4,492,853	-		Pf1N1B4_4041	0.18	+0.9
4,492,879	-		Pf1N1B4_4041	0.24	+2.1
4,492,994	-		Pf1N1B4_4041	0.52	+0.6
4,492,994	-		Pf1N1B4_4041	0.52	+0.6
4,493,035	-		Pf1N1B4_4041	0.62	-0.2
4,493,035	-		Pf1N1B4_4041	0.62	+0.6
4,493,035	-		Pf1N1B4_4041	0.62	+1.6
4,493,284	+				+1.6
4,493,326	-				+1.2
4,493,329	+				-0.8
4,493,330	-				-1.7
4,493,345	+				-0.4
4,493,406	+				-0.8
4,493,406	+				+0.3
4,493,406	+				-1.0
4,493,425	-				-0.4
4,493,433	+				+2.2
4,493,433	+				-0.2
4,493,433	+				+1.1
4,493,433	+				-0.6
4,493,433	+				+1.8
4,493,433	+				+1.6
4,493,433	+				-0.5
4,493,433	+				+0.6
4,493,433	+				+1.6
4,493,433	+				+0.8
4,493,433	+				+0.1
4,493,434	-				+1.3
4,493,434	-				-0.4
4,493,434	-				-0.2
4,493,434	-				+0.3
4,493,434	-				+0.6
4,493,513	+				+0.6
4,493,513	+				+0.3
4,493,513	+				+0.2
4,493,513	+				+0.1
4,493,514	-				-0.2
4,493,514	-				-0.4
4,493,514	-				+1.2
4,493,514	-				+0.6
4,493,514	-				-0.7
4,493,515	+				+2.4
4,493,515	+				-1.7
4,493,515	+				-0.4
4,493,515	+				-0.4
4,493,515	+				+1.6
4,493,516	-				-0.8
4,493,516	-				-0.1
4,493,516	-				+0.6
4,493,516	-				-0.7
4,493,551	+				-0.8