Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3793

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
4,200,353	+				-0.2
4,200,354	-				+1.2
4,200,408	+				-0.6
4,200,408	+				+0.8
4,200,408	+				-1.8
4,200,408	+				-0.6
4,200,408	+				-0.5
4,200,409	-				-0.2
4,200,409	-				-0.5
4,200,409	-				-2.9
4,200,409	-				-1.0
4,200,409	-				+0.2
4,200,409	-				+0.8
4,200,409	-				-0.1
4,200,445	-				-0.9
4,200,746	+		Pf1N1B4_3792	0.45	-1.6
4,200,792	+		Pf1N1B4_3792	0.51	-0.8
4,200,793	-		Pf1N1B4_3792	0.51	+1.5
4,200,793	-		Pf1N1B4_3792	0.51	-1.2
4,200,814	+		Pf1N1B4_3792	0.54	+0.8
4,200,814	+		Pf1N1B4_3792	0.54	-0.2
4,200,815	-		Pf1N1B4_3792	0.54	+0.3
4,200,815	-		Pf1N1B4_3792	0.54	-0.9
4,200,815	-		Pf1N1B4_3792	0.54	+1.2
4,200,815	-		Pf1N1B4_3792	0.54	-1.2
4,200,918	+		Pf1N1B4_3792	0.67	-0.7
4,200,930	+		Pf1N1B4_3792	0.68	-0.2
4,200,936	+		Pf1N1B4_3792	0.69	-0.6
4,200,936	+		Pf1N1B4_3792	0.69	-0.3
4,200,936	+		Pf1N1B4_3792	0.69	+0.8
4,200,936	+		Pf1N1B4_3792	0.69	+0.4
4,200,937	-		Pf1N1B4_3792	0.69	-0.1
4,200,937	-		Pf1N1B4_3792	0.69	-0.2
4,200,937	-		Pf1N1B4_3792	0.69	+2.1
4,200,937	-		Pf1N1B4_3792	0.69	-0.1
4,200,937	-		Pf1N1B4_3792	0.69	+0.3
4,200,937	-		Pf1N1B4_3792	0.69	+0.8
4,201,003	-		Pf1N1B4_3792	0.77	-1.0
4,201,072	-				-0.8
4,201,185	+				-1.0
4,201,190	+				-1.1
4,201,191	-				-0.5
4,201,191	-				-0.2
4,201,365	+				-0.2
4,201,366	-				-0.2
4,201,467	+		Pf1N1B4_3793	0.17	+0.3
4,201,467	+		Pf1N1B4_3793	0.17	-0.7
4,201,468	-		Pf1N1B4_3793	0.17	-0.1
4,201,468	-		Pf1N1B4_3793	0.17	-1.5
4,201,468	-		Pf1N1B4_3793	0.17	+0.3
4,201,494	+		Pf1N1B4_3793	0.20	-1.4
4,201,720	+				+0.8
4,201,720	+				+0.8
4,201,843	+		Pf1N1B4_3793	0.63	-0.6
4,201,956	+		Pf1N1B4_3793	0.76	-0.8
4,201,957	-		Pf1N1B4_3793	0.77	+0.0
4,202,216	-		Pf1N1B4_3794	0.40	+2.1
4,202,216	-		Pf1N1B4_3794	0.40	-0.8
4,202,290	+		Pf1N1B4_3794	0.83	-1.6
4,202,300	+		Pf1N1B4_3794	0.89	+0.3
4,202,300	+		Pf1N1B4_3794	0.89	-0.0
4,202,301	-				-0.2
4,202,301	-		Pf1N1B4_3794	0.89	+0.0
4,202,301	-		Pf1N1B4_3794	0.89	+0.5
4,202,416	-				+0.8
4,202,457	-				+0.5
4,202,464	+				-0.6
4,202,465	-				+0.1
4,202,465	-				-0.2
4,202,465	-				+0.4
4,202,492	+				+0.3
4,202,492	+				+0.2
4,202,514	-				-1.6
4,202,547	-				-1.6
4,202,576	-				-1.0
4,202,687	+				+0.3
4,202,687	+				+0.1
4,202,687	+				-0.5
4,202,687	+				+0.5
4,202,700	+				+1.2
4,202,700	+				-0.8
4,202,701	-				-2.0
4,202,812	+				-0.5