Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3572

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
3,974,273	+		Pf1N1B4_3571	0.13	+0.2
3,974,449	+		Pf1N1B4_3571	0.29	+0.1
3,974,449	+		Pf1N1B4_3571	0.29	-0.5
3,974,449	+		Pf1N1B4_3571	0.29	-0.8
3,974,449	+		Pf1N1B4_3571	0.29	-0.2
3,974,449	+		Pf1N1B4_3571	0.29	-0.2
3,974,449	+		Pf1N1B4_3571	0.29	-1.0
3,974,449	+		Pf1N1B4_3571	0.29	+2.4
3,974,449	+		Pf1N1B4_3571	0.29	-1.0
3,974,449	+		Pf1N1B4_3571	0.29	+0.6
3,974,449	+		Pf1N1B4_3571	0.29	+0.2
3,974,449	+		Pf1N1B4_3571	0.29	-1.4
3,974,450	-		Pf1N1B4_3571	0.29	+0.1
3,974,450	-		Pf1N1B4_3571	0.29	-0.3
3,974,450	-		Pf1N1B4_3571	0.29	-0.0
3,974,450	-		Pf1N1B4_3571	0.29	-0.5
3,974,450	-		Pf1N1B4_3571	0.29	-0.4
3,974,450	-		Pf1N1B4_3571	0.29	-2.5
3,974,450	-		Pf1N1B4_3571	0.29	-0.5
3,974,454	-		Pf1N1B4_3571	0.29	-0.0
3,974,454	-				+0.8
3,974,542	-		Pf1N1B4_3571	0.37	+2.6
3,974,542	-		Pf1N1B4_3571	0.37	-1.6
3,974,847	+		Pf1N1B4_3571	0.65	-1.2
3,974,847	+				+0.8
3,974,848	-				+2.8
3,974,989	+		Pf1N1B4_3571	0.77	-1.2
3,975,256	+				+0.4
3,975,299	+				+0.4
3,975,300	-				-0.5
3,975,491	+		Pf1N1B4_3572	0.18	-0.5
3,975,492	-		Pf1N1B4_3572	0.19	+0.4
3,975,492	-		Pf1N1B4_3572	0.19	-1.2
3,975,941	+		Pf1N1B4_3572	0.53	-0.4
3,975,942	-		Pf1N1B4_3572	0.53	-2.0
3,976,002	-		Pf1N1B4_3572	0.58	-0.8
3,976,024	-				+1.8
3,976,131	-		Pf1N1B4_3572	0.68	-0.5
3,976,131	-		Pf1N1B4_3572	0.68	-0.4
3,976,131	-		Pf1N1B4_3572	0.68	-2.7
3,976,234	+		Pf1N1B4_3572	0.76	+0.2
3,976,234	+		Pf1N1B4_3572	0.76	-2.0
3,976,329	-		Pf1N1B4_3572	0.83	+0.8
3,976,329	-		Pf1N1B4_3572	0.83	-0.8
3,976,373	-		Pf1N1B4_3572	0.86	-2.7
3,976,373	-		Pf1N1B4_3572	0.86	-1.1
3,976,537	+				-0.6
3,976,537	+				-3.0
3,976,545	+				+1.1
3,976,641	+				+1.8
3,976,642	-				+0.5
3,976,726	+				-0.6
3,976,727	-				-0.2
3,976,727	-				-0.2
3,976,769	-				-0.2
3,976,777	+				-0.2
3,976,858	-		Pf1N1B4_3573	0.14	-0.5
3,977,080	-		Pf1N1B4_3573	0.25	-0.8
3,977,242	+		Pf1N1B4_3573	0.32	-0.6