Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3382

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
3,769,171	+				-0.4
3,769,171	+				-0.4
3,769,172	-				-1.7
3,769,337	-		Pf1N1B4_3381	0.15	-0.6
3,769,351	+		Pf1N1B4_3381	0.16	-0.8
3,769,351	+		Pf1N1B4_3381	0.16	-0.2
3,769,351	+		Pf1N1B4_3381	0.16	+0.2
3,769,352	-		Pf1N1B4_3381	0.16	+1.5
3,769,393	+		Pf1N1B4_3381	0.20	-0.1
3,769,393	+		Pf1N1B4_3381	0.20	-0.8
3,769,393	+		Pf1N1B4_3381	0.20	-0.3
3,769,393	+				+0.9
3,769,393	+		Pf1N1B4_3381	0.20	-0.7
3,769,393	+		Pf1N1B4_3381	0.20	+1.6
3,769,393	+		Pf1N1B4_3381	0.20	+0.9
3,769,394	-		Pf1N1B4_3381	0.20	-0.1
3,769,394	-		Pf1N1B4_3381	0.20	+0.5
3,769,394	-		Pf1N1B4_3381	0.20	+0.9
3,769,394	-		Pf1N1B4_3381	0.20	+0.6
3,769,394	-		Pf1N1B4_3381	0.20	-0.7
3,769,394	-		Pf1N1B4_3381	0.20	+0.9
3,770,012	-		Pf1N1B4_3381	0.85	+1.7
3,770,012	-		Pf1N1B4_3381	0.85	-0.9
3,770,092	+				+0.9
3,770,379	+		Pf1N1B4_3382	0.23	-2.1
3,770,380	-		Pf1N1B4_3382	0.23	+0.9
3,770,587	+		Pf1N1B4_3382	0.43	-0.1
3,770,588	-				+0.9
3,770,834	+		Pf1N1B4_3382	0.68	-1.2
3,770,958	+		Pf1N1B4_3382	0.80	+0.6
3,770,958	+		Pf1N1B4_3382	0.80	-2.8
3,770,958	+		Pf1N1B4_3382	0.80	-1.1
3,770,958	+		Pf1N1B4_3382	0.80	-2.1
3,770,958	+		Pf1N1B4_3382	0.80	-2.3
3,770,958	+		Pf1N1B4_3382	0.80	+0.6
3,770,959	-		Pf1N1B4_3382	0.80	-1.9
3,770,959	-		Pf1N1B4_3382	0.80	-0.0
3,770,959	-		Pf1N1B4_3382	0.80	+0.7
3,770,959	-		Pf1N1B4_3382	0.80	-1.1
3,770,959	-				-0.1
3,770,959	-		Pf1N1B4_3382	0.80	-2.1
3,771,150	+				+1.3
3,771,150	+				-1.8
3,771,150	+				+0.6
3,771,150	+				-0.7
3,771,151	-				-0.3
3,771,151	-				+1.9
3,771,151	-				-0.7
3,771,151	-				+0.1
3,771,151	-				-0.4
3,771,223	+				-0.3
3,771,224	-				-0.2
3,771,257	-				+0.6
3,771,257	-				+0.9
3,771,264	-				-1.3
3,771,270	-				-0.6
3,771,270	-				+0.5
3,771,287	+				-0.4
3,771,548	+				-1.9
3,771,548	+				-0.1
3,771,548	+				+0.5
3,771,549	-				+0.9
3,771,549	-				+0.3
3,771,549	-				+0.2
3,771,549	-				-0.7
3,771,549	-				-1.3
3,771,645	-				-1.4
3,771,645	-				-1.0
3,771,645	-				+0.3
3,771,672	+				-0.4
3,771,672	+				-0.0
3,771,673	-				+0.7
3,771,673	-				+1.6
3,771,673	-				-0.7
3,771,909	-		Pf1N1B4_3383	0.20	-1.4
3,771,953	+		Pf1N1B4_3383	0.23	+1.5
3,771,954	-		Pf1N1B4_3383	0.24	-1.4
3,771,954	-		Pf1N1B4_3383	0.24	+1.1
3,771,954	-		Pf1N1B4_3383	0.24	-1.1
3,771,954	-		Pf1N1B4_3383	0.24	-1.4
3,771,954	-		Pf1N1B4_3383	0.24	+0.1
3,771,971	+		Pf1N1B4_3383	0.25	-2.4
3,771,972	-		Pf1N1B4_3383	0.25	+0.3
3,772,121	+		Pf1N1B4_3383	0.38	-1.1
3,772,122	-		Pf1N1B4_3383	0.38	+1.5
3,772,122	-		Pf1N1B4_3383	0.38	+0.9