Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3272

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
3,661,527	+		Pf1N1B4_3271	0.24	+1.8
3,661,527	+		Pf1N1B4_3271	0.24	+0.1
3,661,527	+		Pf1N1B4_3271	0.24	+0.4
3,661,528	-		Pf1N1B4_3271	0.24	+1.2
3,661,536	-		Pf1N1B4_3271	0.24	+1.9
3,661,536	-		Pf1N1B4_3271	0.24	+0.9
3,661,603	-		Pf1N1B4_3271	0.30	-2.8
3,661,660	+		Pf1N1B4_3271	0.35	+0.4
3,661,661	-		Pf1N1B4_3271	0.35	-0.9
3,661,661	-		Pf1N1B4_3271	0.35	-0.1
3,661,828	+		Pf1N1B4_3271	0.49	-0.1
3,661,931	-		Pf1N1B4_3271	0.58	+0.7
3,661,931	-		Pf1N1B4_3271	0.58	+0.9
3,661,931	-		Pf1N1B4_3271	0.58	-0.9
3,661,931	-		Pf1N1B4_3271	0.58	-1.2
3,661,931	-		Pf1N1B4_3271	0.58	+0.5
3,661,979	-		Pf1N1B4_3271	0.62	-1.4
3,662,179	+		Pf1N1B4_3271	0.80	+0.7
3,662,179	+		Pf1N1B4_3271	0.80	-0.1
3,662,179	+		Pf1N1B4_3271	0.80	-0.1
3,662,180	-		Pf1N1B4_3271	0.80	-0.2
3,662,180	-		Pf1N1B4_3271	0.80	-0.4
3,662,180	-				+1.5
3,662,180	-		Pf1N1B4_3271	0.80	+1.3
3,662,180	-		Pf1N1B4_3271	0.80	-0.6
3,662,184	-		Pf1N1B4_3271	0.80	+0.4
3,662,272	+		Pf1N1B4_3271	0.87	-0.5
3,662,272	+		Pf1N1B4_3271	0.87	-0.5
3,662,272	+		Pf1N1B4_3271	0.87	-0.1
3,662,273	-		Pf1N1B4_3271	0.88	+0.4
3,662,273	-		Pf1N1B4_3271	0.88	-1.8
3,662,273	-		Pf1N1B4_3271	0.88	-0.8
3,662,314	-				-1.4
3,662,347	+				+1.5
3,662,347	+				+1.5
3,662,347	+				+0.4
3,662,347	+				-0.9
3,662,347	+				-0.1
3,662,347	+				+1.9
3,662,348	-				-0.2
3,662,348	-				+0.9
3,662,348	-				+0.9
3,662,348	-				-1.4
3,662,348	-				+1.5
3,662,348	-				+0.1
3,662,348	-				+0.4
3,662,348	-				-3.4
3,662,348	-				+0.4
3,662,460	-		Pf1N1B4_3272	0.20	-2.2
3,662,499	+		Pf1N1B4_3272	0.53	-0.8
3,662,707	+		Pf1N1B4_3273	0.28	-0.1
3,662,707	+		Pf1N1B4_3273	0.28	+0.4
3,662,708	-		Pf1N1B4_3273	0.29	+0.5
3,662,708	-		Pf1N1B4_3273	0.29	+1.3
3,662,708	-		Pf1N1B4_3273	0.29	+0.8
3,663,139	+				+0.2
3,663,139	+				+0.4
3,663,140	-				+0.7
3,663,140	-				-0.6
3,663,140	-				+0.4
3,663,140	-				-2.2
3,663,140	-				+0.3
3,663,156	-				+0.6
3,663,156	-				-0.3
3,663,162	+				+0.9
3,663,162	+				-0.4
3,663,163	-				-0.1
3,663,163	-				-0.4
3,663,163	-				+0.6
3,663,184	+				+0.5
3,663,184	+				-0.1
3,663,186	+				-1.4
3,663,186	+				+0.0
3,663,186	+				-0.1
3,663,186	+				-0.1
3,663,186	+				-0.4
3,663,187	-				+0.2
3,663,187	-				-0.1
3,663,187	-				+0.9
3,663,187	-				-0.4
3,663,187	-				-1.1
3,663,187	-				-0.6
3,663,191	+				-0.4
3,663,289	+		Pf1N1B4_3274	0.21	-0.9
3,663,289	+		Pf1N1B4_3274	0.21	+0.1
3,663,290	-		Pf1N1B4_3274	0.21	-0.6
3,663,290	-		Pf1N1B4_3274	0.21	-1.4
3,663,290	-		Pf1N1B4_3274	0.21	-0.4
3,663,315	+		Pf1N1B4_3274	0.27	+0.2
3,663,316	-		Pf1N1B4_3274	0.28	-3.0
3,663,387	+		Pf1N1B4_3274	0.45	-0.1
3,663,387	+		Pf1N1B4_3274	0.45	+0.5
3,663,388	-		Pf1N1B4_3274	0.45	+0.7
3,663,502	-		Pf1N1B4_3274	0.72	-0.1
3,663,502	-				+1.4