Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3229

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
3,614,715	-		Pf1N1B4_3228	0.66	-0.3
3,615,116	-				-0.0
3,615,311	+				-0.6
3,615,312	-				-1.0
3,615,327	-				+1.6
3,615,327	-				+0.5
3,615,343	+				+3.0
3,615,387	-				+0.4
3,615,387	-				-1.9
3,615,463	+				-0.4
3,615,463	+				+0.2
3,615,464	-				-0.0
3,615,501	+				+0.6
3,615,501	+				-0.3
3,615,501	+				+2.0
3,615,540	-				-0.0
3,615,564	+				+2.1
3,615,564	+				+0.7
3,615,565	-				-0.8
3,615,577	+				+0.6
3,615,577	+				+0.2
3,615,578	-				-0.9
3,615,586	+				-0.3
3,615,586	+				-0.0
3,615,586	+				-0.8
3,615,586	+				+0.5
3,615,586	+				+0.4
3,615,586	+				+0.9
3,615,586	+				+0.1
3,615,586	+				+0.8
3,615,586	+				-0.2
3,615,586	+				-0.0
3,615,586	+				+1.7
3,615,586	+				-0.1
3,615,586	+				-0.6
3,615,587	-				+1.0
3,615,587	-				+0.5
3,615,587	-				+1.7
3,615,587	-				+0.4
3,615,587	-				-1.3
3,615,587	-				+0.2
3,615,587	-				+1.3
3,615,703	+		Pf1N1B4_3229	0.40	+1.0
3,615,741	+		Pf1N1B4_3229	0.59	+0.8
3,615,741	+		Pf1N1B4_3229	0.59	+1.0
3,615,741	+		Pf1N1B4_3229	0.59	+1.3
3,615,741	+		Pf1N1B4_3229	0.59	-1.0
3,615,741	+		Pf1N1B4_3229	0.59	+0.3
3,615,741	+		Pf1N1B4_3229	0.59	-0.8
3,615,741	+		Pf1N1B4_3229	0.59	+1.6
3,615,741	+		Pf1N1B4_3229	0.59	+0.4
3,615,742	-		Pf1N1B4_3229	0.59	+0.4
3,615,742	-		Pf1N1B4_3229	0.59	+0.6
3,615,742	-		Pf1N1B4_3229	0.59	-1.6
3,615,774	+		Pf1N1B4_3229	0.75	+0.3
3,615,774	+		Pf1N1B4_3229	0.75	+1.1
3,615,774	+		Pf1N1B4_3229	0.75	+0.8
3,615,774	+		Pf1N1B4_3229	0.75	+0.7
3,615,774	+		Pf1N1B4_3229	0.75	+0.5
3,615,774	+		Pf1N1B4_3229	0.75	+1.0
3,615,774	+		Pf1N1B4_3229	0.75	+1.2
3,615,774	+		Pf1N1B4_3229	0.75	+0.3
3,615,775	-		Pf1N1B4_3229	0.76	+0.4
3,615,829	+				+0.3
3,615,829	+				-1.1
3,615,829	+				-1.6
3,615,829	+				+0.8
3,615,829	+				+0.9
3,615,830	-				-0.3
3,615,848	+				+0.2
3,615,849	-				+1.0
3,615,878	-				+0.8
3,615,878	-				+0.2
3,615,878	-				+1.0
3,615,987	+				-0.3
3,615,987	+				-0.0
3,615,987	+				+0.6
3,615,987	+				+1.0
3,615,987	+				-2.6
3,615,987	+				-0.1
3,615,988	-				-1.1
3,615,988	-				-0.5
3,615,988	-				-0.0
3,616,028	+				+0.1
3,616,028	+				+1.6
3,616,028	+				-0.5
3,616,029	-				+0.5
3,616,029	-				+2.0
3,616,072	+				+1.7
3,616,072	+				-0.8
3,616,103	+				+0.2
3,616,131	+				-0.5
3,616,131	+				-0.5
3,616,131	+				-0.3
3,616,132	-				-0.3
3,616,155	+				-0.4
3,616,156	-				-1.0
3,616,156	-				-0.9
3,616,156	-				-0.0
3,616,169	+				-1.2
3,616,170	-				+0.7
3,616,175	+				+0.4
3,616,225	+				-0.0
3,616,225	+				+0.5
3,616,225	+				-0.6
3,616,225	+				+0.6
3,616,226	-				-0.9
3,616,226	-				+1.0
3,616,226	-				-0.6
3,616,226	-				+0.7
3,616,246	-				+1.0
3,616,246	-				+1.0
3,616,270	+				-2.7
3,616,270	+				-1.2
3,616,284	+				-0.3
3,616,285	-				-0.3
3,616,287	+				-0.8
3,616,288	-				+1.2
3,616,304	-				-0.8
3,616,320	+				+1.2
3,616,329	+				+1.2
3,616,329	+				+1.0
3,616,329	+				+0.5
3,616,329	+				-1.8
3,616,329	+				+0.7
3,616,330	-				-1.3
3,616,330	-				-0.4
3,616,330	-				+1.2
3,616,330	-				-0.0
3,616,361	+				-1.6
3,616,361	+				+1.1
3,616,361	+				+1.0
3,616,361	+				+0.4
3,616,362	-				+0.6
3,616,362	-				+0.4
3,616,363	+				-0.2
3,616,363	+				+1.3
3,616,363	+				-0.8
3,616,363	+				-0.2
3,616,363	+				-1.6
3,616,363	+				-1.3
3,616,363	+				-0.1
3,616,364	-				-1.8
3,616,364	-				+2.0
3,616,436	-				-1.2
3,616,456	+				-0.2
3,616,456	+				+1.0
3,616,456	+				-1.3
3,616,456	+				-2.3
3,616,456	+				-0.8
3,616,456	+				-0.2
3,616,456	+				+0.2
3,616,456	+				-0.0
3,616,456	+				+0.6
3,616,456	+				-0.4
3,616,456	+				+0.3
3,616,456	+				-0.6
3,616,456	+				-2.0
3,616,456	+				-1.0
3,616,457	-				-0.2
3,616,457	-				-0.3
3,616,457	-				-0.0
3,616,457	-				+0.2
3,616,457	-				-1.0
3,616,457	-				-0.3
3,616,457	-				-0.2
3,616,457	-				-0.0
3,616,457	-				-0.0
3,616,457	-				-0.5
3,616,460	-				+2.0
3,616,460	-				+0.8
3,616,710	+		Pf1N1B4_3230	0.26	+2.3
3,616,710	+		Pf1N1B4_3230	0.26	+2.3
3,616,710	+		Pf1N1B4_3230	0.26	+1.7
3,616,710	+		Pf1N1B4_3230	0.26	+0.4
3,616,710	+				+1.0
3,616,710	+		Pf1N1B4_3230	0.26	-0.9
3,616,710	+		Pf1N1B4_3230	0.26	-1.0
3,616,710	+		Pf1N1B4_3230	0.26	+1.7
3,616,711	-		Pf1N1B4_3230	0.26	+2.0
3,616,711	-		Pf1N1B4_3230	0.26	+0.7
3,616,711	-		Pf1N1B4_3230	0.26	-0.5
3,616,711	-		Pf1N1B4_3230	0.26	-0.6
3,616,711	-		Pf1N1B4_3230	0.26	+0.7
3,616,711	-		Pf1N1B4_3230	0.26	+0.8
3,616,711	-		Pf1N1B4_3230	0.26	-1.5
3,616,711	-		Pf1N1B4_3230	0.26	-0.6
3,616,714	+		Pf1N1B4_3230	0.27	+1.7
3,616,714	+		Pf1N1B4_3230	0.27	+2.0
3,616,714	+		Pf1N1B4_3230	0.27	+0.2
3,616,714	+		Pf1N1B4_3230	0.27	+0.6
3,616,715	-		Pf1N1B4_3230	0.27	-0.5
3,616,715	-		Pf1N1B4_3230	0.27	-0.0
3,616,757	+		Pf1N1B4_3230	0.32	-1.8
3,616,757	+		Pf1N1B4_3230	0.32	-1.0
3,616,757	+		Pf1N1B4_3230	0.32	-0.8
3,616,757	+		Pf1N1B4_3230	0.32	+0.6
3,616,757	+		Pf1N1B4_3230	0.32	-1.8
3,616,758	-		Pf1N1B4_3230	0.32	-1.6
3,616,758	-		Pf1N1B4_3230	0.32	+0.2
3,616,758	-		Pf1N1B4_3230	0.32	+0.6
3,616,758	-		Pf1N1B4_3230	0.32	+0.4
3,616,758	-		Pf1N1B4_3230	0.32	+0.3
3,616,776	+		Pf1N1B4_3230	0.34	+0.2
3,616,776	+		Pf1N1B4_3230	0.34	-0.8
3,616,776	+		Pf1N1B4_3230	0.34	-2.0
3,616,776	+		Pf1N1B4_3230	0.34	+0.1
3,616,776	+		Pf1N1B4_3230	0.34	-0.0
3,616,776	+		Pf1N1B4_3230	0.34	-0.8
3,616,777	-		Pf1N1B4_3230	0.34	+0.6
3,616,777	-		Pf1N1B4_3230	0.34	+0.0
3,616,777	-		Pf1N1B4_3230	0.34	-2.0
3,616,777	-		Pf1N1B4_3230	0.34	+0.6
3,616,777	-		Pf1N1B4_3230	0.34	+1.0
3,616,796	+		Pf1N1B4_3230	0.36	-0.0
3,616,796	+		Pf1N1B4_3230	0.36	-0.6
3,616,796	+		Pf1N1B4_3230	0.36	-0.3
3,616,796	+		Pf1N1B4_3230	0.36	-1.6
3,616,796	+		Pf1N1B4_3230	0.36	+0.4
3,616,796	+		Pf1N1B4_3230	0.36	-1.3
3,616,796	+		Pf1N1B4_3230	0.36	+1.4
3,616,796	+		Pf1N1B4_3230	0.36	-2.2
3,616,796	+		Pf1N1B4_3230	0.36	-2.0
3,616,796	+		Pf1N1B4_3230	0.36	-3.2
3,616,796	+				+1.6
3,616,797	-		Pf1N1B4_3230	0.36	-0.6
3,616,797	-		Pf1N1B4_3230	0.36	-0.1
3,616,797	-		Pf1N1B4_3230	0.36	-1.0