Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3195

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
3,575,887	+		Pf1N1B4_3194	0.67	-2.5
3,576,620	+				-0.3
3,576,620	+				-0.0
3,576,620	+				-0.6
3,576,620	+				+1.2
3,576,620	+				+1.0
3,576,621	-				+1.0
3,576,621	-				+0.2
3,576,638	+				+0.1
3,576,638	+				+0.5
3,576,639	-				-1.3
3,576,639	-				+0.4
3,576,639	-				-1.8
3,576,639	-				+1.0
3,576,700	-				-1.0
3,577,016	-		Pf1N1B4_3195	0.13	-1.1
3,577,113	+		Pf1N1B4_3195	0.16	-0.0
3,577,113	+		Pf1N1B4_3195	0.16	-0.0
3,577,114	-		Pf1N1B4_3195	0.16	+0.7
3,577,178	+				-0.0
3,577,178	+		Pf1N1B4_3195	0.19	-1.9
3,577,342	+		Pf1N1B4_3195	0.25	+0.4
3,577,579	+		Pf1N1B4_3195	0.35	-0.0
3,577,580	-		Pf1N1B4_3195	0.35	-0.0
3,577,580	-		Pf1N1B4_3195	0.35	-0.0
3,577,624	+				-1.3
3,577,624	+		Pf1N1B4_3195	0.37	-0.2
3,577,624	+		Pf1N1B4_3195	0.37	-1.0
3,577,625	-		Pf1N1B4_3195	0.37	-0.0
3,577,625	-		Pf1N1B4_3195	0.37	-1.0
3,577,687	+		Pf1N1B4_3195	0.39	+0.3
3,577,687	+				+1.0
3,577,688	-		Pf1N1B4_3195	0.39	-1.8
3,577,688	-				+1.0
3,577,691	-		Pf1N1B4_3195	0.39	-0.6
3,577,741	+		Pf1N1B4_3195	0.41	-0.6
3,578,129	-		Pf1N1B4_3195	0.57	-0.6
3,578,129	-		Pf1N1B4_3195	0.57	-0.7
3,578,159	-		Pf1N1B4_3195	0.58	-1.0
3,578,363	-		Pf1N1B4_3195	0.66	-0.0
3,578,561	-		Pf1N1B4_3195	0.74	-0.6
3,578,587	+		Pf1N1B4_3195	0.75	-1.2
3,578,587	+		Pf1N1B4_3195	0.75	-0.6
3,578,588	-		Pf1N1B4_3195	0.75	+0.6
3,578,718	+		Pf1N1B4_3195	0.80	-1.8
3,578,718	+		Pf1N1B4_3195	0.80	-1.0
3,578,718	+		Pf1N1B4_3195	0.80	-1.6
3,578,719	-		Pf1N1B4_3195	0.80	+0.6
3,578,719	-		Pf1N1B4_3195	0.80	+0.4
3,578,719	-		Pf1N1B4_3195	0.80	-1.2
3,578,722	+		Pf1N1B4_3195	0.80	-1.3
3,578,722	+		Pf1N1B4_3195	0.80	+1.0
3,578,722	+		Pf1N1B4_3195	0.80	-2.2
3,578,722	+		Pf1N1B4_3195	0.80	-1.3
3,578,722	+		Pf1N1B4_3195	0.80	-1.0
3,578,723	-		Pf1N1B4_3195	0.80	+0.7
3,578,723	-		Pf1N1B4_3195	0.80	-1.2
3,578,723	-		Pf1N1B4_3195	0.80	-0.0
3,578,941	+		Pf1N1B4_3195	0.89	-0.6
3,579,220	+				-1.0
3,579,221	-				+0.7
3,579,290	+				-0.1
3,579,348	+				-0.0
3,579,349	-				+1.0
3,579,421	+				-2.2
3,579,421	+				-0.2
3,579,421	+				-0.0
3,579,422	-				-1.0
3,579,423	+				-2.6
3,579,423	+				-1.0
3,579,423	+				-0.9
3,579,423	+				-0.0
3,579,423	+				-1.2
3,579,423	+				+1.7
3,579,423	+				+1.0
3,579,423	+				-2.2
3,579,424	-				-1.0
3,579,424	-				-1.1
3,579,424	-				+0.6
3,579,468	+				+0.3
3,579,468	+				+0.4
3,579,469	-				-2.3
3,579,469	-				-1.7
3,579,476	+				-0.0
3,579,476	+				+0.5
3,579,476	+				-0.8
3,579,477	-				-1.3
3,579,477	-				+0.4
3,579,477	-				+0.3
3,579,477	-				-0.3
3,579,477	-				+1.6
3,579,477	-				+0.4
3,579,844	-		Pf1N1B4_3196	0.34	+2.6
3,579,930	+		Pf1N1B4_3196	0.42	+1.0
3,579,930	+		Pf1N1B4_3196	0.42	+1.4
3,579,930	+		Pf1N1B4_3196	0.42	+0.6
3,579,930	+		Pf1N1B4_3196	0.42	+2.6
3,579,930	+		Pf1N1B4_3196	0.42	-0.1
3,579,930	+		Pf1N1B4_3196	0.42	-0.0
3,579,931	-		Pf1N1B4_3196	0.42	-0.0
3,579,931	-		Pf1N1B4_3196	0.42	+1.6
3,579,931	-		Pf1N1B4_3196	0.42	-0.6
3,579,931	-		Pf1N1B4_3196	0.42	-1.3
3,579,931	-		Pf1N1B4_3196	0.42	-0.1
3,579,931	-		Pf1N1B4_3196	0.42	-0.7
3,579,952	+		Pf1N1B4_3196	0.44	+1.0
3,579,953	-		Pf1N1B4_3196	0.44	+0.4
3,579,953	-		Pf1N1B4_3196	0.44	-1.0
3,580,181	+		Pf1N1B4_3196	0.64	+0.5
3,580,181	+		Pf1N1B4_3196	0.64	+0.3
3,580,181	+		Pf1N1B4_3196	0.64	+1.8
3,580,182	-		Pf1N1B4_3196	0.64	+0.6
3,580,182	-		Pf1N1B4_3196	0.64	+0.4
3,580,182	-		Pf1N1B4_3196	0.64	+0.1
3,580,182	-		Pf1N1B4_3196	0.64	-2.0
3,580,183	+		Pf1N1B4_3196	0.64	-1.9
3,580,183	+		Pf1N1B4_3196	0.64	-1.3
3,580,190	+		Pf1N1B4_3196	0.65	+1.0
3,580,190	+		Pf1N1B4_3196	0.65	-0.0
3,580,191	-		Pf1N1B4_3196	0.65	-0.0