Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3056

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
3,436,607	-				-0.5
3,436,607	-				+4.1
3,436,607	-				+1.1
3,436,612	+				+1.1
3,436,613	-				+0.7
3,436,652	-		Pf1N1B4_3055	0.12	-2.5
3,436,674	-		Pf1N1B4_3055	0.15	-2.1
3,436,684	-		Pf1N1B4_3055	0.16	+1.4
3,436,693	+		Pf1N1B4_3055	0.17	-0.9
3,436,693	+		Pf1N1B4_3055	0.17	-1.1
3,436,693	+		Pf1N1B4_3055	0.17	+0.7
3,436,694	-		Pf1N1B4_3055	0.17	+1.1
3,436,694	-		Pf1N1B4_3055	0.17	+0.6
3,437,044	-		Pf1N1B4_3055	0.57	-0.2
3,437,263	+		Pf1N1B4_3055	0.83	-1.3
3,437,263	+		Pf1N1B4_3055	0.83	-1.4
3,437,263	+		Pf1N1B4_3055	0.83	-0.4
3,437,263	+		Pf1N1B4_3055	0.83	+0.5
3,437,263	+		Pf1N1B4_3055	0.83	+2.1
3,437,263	+		Pf1N1B4_3055	0.83	+0.1
3,437,263	+		Pf1N1B4_3055	0.83	-0.8
3,437,263	+		Pf1N1B4_3055	0.83	-1.4
3,437,263	+		Pf1N1B4_3055	0.83	-1.8
3,437,264	-		Pf1N1B4_3055	0.83	+1.1
3,437,264	-		Pf1N1B4_3055	0.83	-0.9
3,437,264	-		Pf1N1B4_3055	0.83	+1.1
3,437,264	-		Pf1N1B4_3055	0.83	+0.3
3,437,264	-		Pf1N1B4_3055	0.83	+0.3
3,437,264	-		Pf1N1B4_3055	0.83	-2.5
3,437,265	+		Pf1N1B4_3055	0.83	-0.3
3,437,265	+		Pf1N1B4_3055	0.83	+1.6
3,437,265	+		Pf1N1B4_3055	0.83	+1.2
3,437,265	+		Pf1N1B4_3055	0.83	+0.6
3,437,265	+		Pf1N1B4_3055	0.83	+0.7
3,437,265	+		Pf1N1B4_3055	0.83	+0.4
3,437,266	-		Pf1N1B4_3055	0.83	+0.8
3,437,266	-		Pf1N1B4_3055	0.83	-1.3
3,437,266	-		Pf1N1B4_3055	0.83	-0.8
3,437,266	-		Pf1N1B4_3055	0.83	+0.5
3,437,369	+				-0.4
3,437,369	+				+1.1
3,437,370	-				+0.1
3,437,370	-				-0.5
3,437,370	-				-0.1
3,437,370	-				-1.3
3,437,370	-				-1.1
3,437,370	-				+0.3
3,437,370	-				+0.1
3,437,370	-				+0.1
3,437,371	+				+1.1
3,437,371	+				+1.1
3,437,372	-				+1.1
3,437,372	-				+0.8
3,437,372	-				+0.1
3,437,372	-				-2.6
3,437,372	-				+0.1
3,437,372	-				+1.1
3,437,554	+				-1.3
3,437,554	+				-0.5
3,437,555	-				+1.4
3,437,895	+		Pf1N1B4_3056	0.66	-1.3
3,437,895	+		Pf1N1B4_3056	0.66	-0.4
3,437,895	+		Pf1N1B4_3056	0.66	-0.4
3,437,896	-		Pf1N1B4_3056	0.66	-2.0
3,437,896	-		Pf1N1B4_3056	0.66	-0.4
3,437,896	-		Pf1N1B4_3056	0.66	-1.5
3,437,896	-		Pf1N1B4_3056	0.66	+0.2
3,437,972	-		Pf1N1B4_3056	0.83	-1.2
3,437,972	-		Pf1N1B4_3056	0.83	+0.9
3,437,972	-		Pf1N1B4_3056	0.83	-1.8
3,437,972	-		Pf1N1B4_3056	0.83	-1.8
3,438,067	+				-1.8
3,438,067	+				-1.3
3,438,067	+				+1.1
3,438,067	+				-1.5
3,438,067	+				+0.1
3,438,067	+				+0.3
3,438,067	+				-1.8
3,438,068	-		Pf1N1B4_3057	0.10	-0.2
3,438,068	-		Pf1N1B4_3057	0.10	-0.5
3,438,068	-				+0.6
3,438,068	-		Pf1N1B4_3057	0.10	-1.3
3,438,145	+		Pf1N1B4_3057	0.30	-1.9
3,438,146	-		Pf1N1B4_3057	0.30	+1.4
3,438,146	-		Pf1N1B4_3057	0.30	+0.1
3,438,146	-		Pf1N1B4_3057	0.30	-1.5
3,438,313	+		Pf1N1B4_3057	0.73	+0.2
3,438,369	+		Pf1N1B4_3057	0.87	+0.4
3,438,370	-		Pf1N1B4_3057	0.87	+0.8
3,438,370	-		Pf1N1B4_3057	0.87	-0.5
3,438,604	+		Pf1N1B4_3058	0.26	-2.1
3,438,605	-		Pf1N1B4_3058	0.26	+0.7
3,438,808	-		Pf1N1B4_3058	0.55	+0.8
3,438,864	+		Pf1N1B4_3058	0.63	-0.9
3,438,864	+		Pf1N1B4_3058	0.63	-2.6
3,438,864	+		Pf1N1B4_3058	0.63	-0.1
3,438,864	+				+1.1
3,438,865	-		Pf1N1B4_3058	0.64	+0.5
3,438,865	-		Pf1N1B4_3058	0.64	+0.1
3,438,865	-		Pf1N1B4_3058	0.64	+0.8
3,438,865	-		Pf1N1B4_3058	0.64	-0.3
3,438,865	-		Pf1N1B4_3058	0.64	-0.9
3,438,959	-		Pf1N1B4_3058	0.77	-1.1
3,439,029	-		Pf1N1B4_3058	0.87	+0.6
3,439,029	-		Pf1N1B4_3058	0.87	-1.8
3,439,029	-		Pf1N1B4_3058	0.87	+0.3
3,439,029	-		Pf1N1B4_3058	0.87	+1.3