Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2845

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
3,188,726	-		Pf1N1B4_2843	0.73	+1.0
3,188,799	+				+0.8
3,188,799	+				-2.1
3,188,799	+				+0.2
3,188,799	+				+0.7
3,188,799	+				-0.5
3,188,799	+				+0.2
3,188,799	+				+0.4
3,188,800	-				+2.2
3,188,800	-				-1.6
3,188,800	-				+1.2
3,188,807	+				-0.7
3,188,808	-				-0.8
3,188,834	+				-0.9
3,188,834	+				-0.2
3,188,983	-				+2.2
3,189,142	+				-0.2
3,189,143	-				-0.8
3,189,143	-				+0.1
3,189,151	+				+0.1
3,189,151	+				+0.2
3,189,152	-				-0.0
3,189,157	+				-0.2
3,189,158	-				-1.8
3,189,513	-				+1.6
3,189,552	-				+0.4
3,189,567	+				+0.8
3,189,567	+				+0.9
3,189,567	+				+0.5
3,189,568	-				-0.4
3,189,568	-				-0.4
3,189,568	-				-0.6
3,189,579	+				-1.0
3,189,580	-				+1.5
3,189,652	+				+0.2
3,189,652	+				-0.2
3,189,652	+				-1.8
3,189,653	-				-1.1
3,189,653	-				+0.5
3,189,663	-				+1.4
3,189,709	+				+2.2
3,189,709	+				-1.2
3,189,709	-				-0.4
3,189,710	-				-0.5
3,189,710	-				-0.4
3,189,724	+				+0.6
3,189,725	-				-0.5
3,189,725	-				-0.1
3,189,725	-				-0.8
3,189,775	-		Pf1N1B4_2845	0.19	-1.0
3,189,780	+		Pf1N1B4_2845	0.20	-0.1
3,189,780	+		Pf1N1B4_2845	0.20	-0.7
3,189,780	+		Pf1N1B4_2845	0.20	+1.6
3,189,780	+		Pf1N1B4_2845	0.20	-2.2
3,189,780	+		Pf1N1B4_2845	0.20	-1.1
3,189,780	+				+1.2
3,189,781	-		Pf1N1B4_2845	0.21	-1.8
3,189,781	-		Pf1N1B4_2845	0.21	-1.6
3,189,802	-		Pf1N1B4_2845	0.28	-0.4
3,189,802	-		Pf1N1B4_2845	0.28	-1.1
3,189,802	-		Pf1N1B4_2845	0.28	-1.4
3,189,802	-		Pf1N1B4_2845	0.28	-0.4
3,189,853	-		Pf1N1B4_2845	0.45	-0.4
3,189,949	+		Pf1N1B4_2845	0.77	-0.2
3,189,949	+		Pf1N1B4_2845	0.77	-0.2
3,189,950	-		Pf1N1B4_2845	0.77	-0.6
3,189,950	-		Pf1N1B4_2845	0.77	-0.8
3,189,950	-		Pf1N1B4_2845	0.77	-1.0
3,190,091	+				+0.8
3,190,091	+				-1.0
3,190,092	-				-0.2
3,190,092	-				-1.6
3,190,130	+				+0.1
3,190,130	+				+2.8
3,190,131	-				-0.4
3,190,131	-				-0.2
3,190,131	-				-0.4
3,190,131	-				-0.6
3,190,131	-				+0.8
3,190,289	+				+0.1
3,190,289	+				+0.2
3,190,289	+				-0.8
3,190,290	-				-0.2
3,190,355	-		Pf1N1B4_2846	0.12	-0.6
3,190,385	+		Pf1N1B4_2846	0.13	-0.2
3,190,385	+		Pf1N1B4_2846	0.13	-0.4
3,190,385	+		Pf1N1B4_2846	0.13	-1.6
3,190,386	-		Pf1N1B4_2846	0.13	-0.8
3,190,386	-		Pf1N1B4_2846	0.13	-0.4
3,190,388	+		Pf1N1B4_2846	0.13	-1.4
3,190,388	+		Pf1N1B4_2846	0.13	-2.1
3,190,388	+		Pf1N1B4_2846	0.13	+1.2
3,190,388	+		Pf1N1B4_2846	0.13	-0.1
3,190,388	+		Pf1N1B4_2846	0.13	+0.2
3,190,389	-		Pf1N1B4_2846	0.13	-0.6
3,190,389	-		Pf1N1B4_2846	0.13	+0.1
3,190,389	-		Pf1N1B4_2846	0.13	-0.5
3,190,389	-		Pf1N1B4_2846	0.13	-1.4
3,190,389	-		Pf1N1B4_2846	0.13	+0.6
3,190,389	-		Pf1N1B4_2846	0.13	-0.3
3,190,394	+		Pf1N1B4_2846	0.13	+1.2
3,190,394	+		Pf1N1B4_2846	0.13	+0.2
3,190,394	+		Pf1N1B4_2846	0.13	-0.7
3,190,394	+		Pf1N1B4_2846	0.13	-0.6
3,190,394	+		Pf1N1B4_2846	0.13	+0.2
3,190,394	+		Pf1N1B4_2846	0.13	+1.0
3,190,395	-		Pf1N1B4_2846	0.13	-1.0
3,190,400	+		Pf1N1B4_2846	0.13	-1.0
3,190,401	-		Pf1N1B4_2846	0.13	-0.1
3,190,401	-		Pf1N1B4_2846	0.13	-1.2
3,190,671	+		Pf1N1B4_2846	0.22	+0.9
3,190,671	+		Pf1N1B4_2846	0.22	+0.5
3,190,671	+		Pf1N1B4_2846	0.22	-0.8
3,190,671	+		Pf1N1B4_2846	0.22	-1.8
3,190,672	-		Pf1N1B4_2846	0.22	-0.1
3,190,672	-		Pf1N1B4_2846	0.22	-2.6
3,190,672	-		Pf1N1B4_2846	0.22	-1.2
3,190,672	-		Pf1N1B4_2846	0.22	+0.4
3,190,672	-		Pf1N1B4_2846	0.22	+0.6
3,190,674	+		Pf1N1B4_2846	0.22	-1.6
3,190,674	+		Pf1N1B4_2846	0.22	+1.2
3,190,674	+		Pf1N1B4_2846	0.22	+2.2
3,190,674	+		Pf1N1B4_2846	0.22	+0.5
3,190,674	+		Pf1N1B4_2846	0.22	+0.2
3,190,675	-		Pf1N1B4_2846	0.22	-0.8
3,190,675	-		Pf1N1B4_2846	0.22	-1.4
3,190,675	-		Pf1N1B4_2846	0.22	-1.6
3,190,675	-		Pf1N1B4_2846	0.22	+1.8
3,190,675	-		Pf1N1B4_2846	0.22	-0.8
3,190,877	+		Pf1N1B4_2846	0.29	-0.5
3,190,877	+		Pf1N1B4_2846	0.29	+2.2
3,190,877	+		Pf1N1B4_2846	0.29	+1.5
3,190,878	-		Pf1N1B4_2846	0.29	+1.9
3,190,878	-		Pf1N1B4_2846	0.29	+0.8
3,190,878	-		Pf1N1B4_2846	0.29	+0.8
3,190,937	+		Pf1N1B4_2846	0.31	-0.1
3,190,937	+		Pf1N1B4_2846	0.31	+1.8
3,190,938	-		Pf1N1B4_2846	0.31	-2.2