Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2845

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2843 and Pf1N1B4_2844 are separated by 317 nucleotidesPf1N1B4_2844 and Pf1N1B4_2845 are separated by 204 nucleotidesPf1N1B4_2845 and Pf1N1B4_2846 overlap by 4 nucleotides Pf1N1B4_2843 - Type IV pilin PilA, at 3,188,418 to 3,188,840 _2843 Pf1N1B4_2844 - Osmotically inducible protein OsmY, at 3,189,158 to 3,189,514 _2844 Pf1N1B4_2845 - FIG00953066: hypothetical protein, at 3,189,719 to 3,190,018 _2845 Pf1N1B4_2846 - putative exported protein, at 3,190,015 to 3,192,960 _2846 Position (kb) 3189 3190 3191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3188.726 kb on - strand, within Pf1N1B4_2843at 3188.799 kb on + strandat 3188.799 kb on + strandat 3188.799 kb on + strandat 3188.799 kb on + strandat 3188.799 kb on + strandat 3188.799 kb on + strandat 3188.799 kb on + strandat 3188.800 kb on - strandat 3188.800 kb on - strandat 3188.800 kb on - strandat 3188.807 kb on + strandat 3188.808 kb on - strandat 3188.834 kb on + strandat 3188.834 kb on + strandat 3188.983 kb on - strandat 3189.142 kb on + strandat 3189.143 kb on - strandat 3189.143 kb on - strandat 3189.151 kb on + strandat 3189.151 kb on + strandat 3189.152 kb on - strandat 3189.157 kb on + strandat 3189.158 kb on - strandat 3189.513 kb on - strandat 3189.552 kb on - strandat 3189.567 kb on + strandat 3189.567 kb on + strandat 3189.567 kb on + strandat 3189.568 kb on - strandat 3189.568 kb on - strandat 3189.568 kb on - strandat 3189.579 kb on + strandat 3189.580 kb on - strandat 3189.652 kb on + strandat 3189.652 kb on + strandat 3189.652 kb on + strandat 3189.653 kb on - strandat 3189.653 kb on - strandat 3189.663 kb on - strandat 3189.709 kb on + strandat 3189.709 kb on + strandat 3189.709 kb on - strandat 3189.710 kb on - strandat 3189.710 kb on - strandat 3189.724 kb on + strandat 3189.725 kb on - strandat 3189.725 kb on - strandat 3189.725 kb on - strandat 3189.775 kb on - strand, within Pf1N1B4_2845at 3189.780 kb on + strand, within Pf1N1B4_2845at 3189.780 kb on + strand, within Pf1N1B4_2845at 3189.780 kb on + strand, within Pf1N1B4_2845at 3189.780 kb on + strand, within Pf1N1B4_2845at 3189.780 kb on + strand, within Pf1N1B4_2845at 3189.780 kb on + strandat 3189.781 kb on - strand, within Pf1N1B4_2845at 3189.781 kb on - strand, within Pf1N1B4_2845at 3189.802 kb on - strand, within Pf1N1B4_2845at 3189.802 kb on - strand, within Pf1N1B4_2845at 3189.802 kb on - strand, within Pf1N1B4_2845at 3189.802 kb on - strand, within Pf1N1B4_2845at 3189.853 kb on - strand, within Pf1N1B4_2845at 3189.949 kb on + strand, within Pf1N1B4_2845at 3189.949 kb on + strand, within Pf1N1B4_2845at 3189.950 kb on - strand, within Pf1N1B4_2845at 3189.950 kb on - strand, within Pf1N1B4_2845at 3189.950 kb on - strand, within Pf1N1B4_2845at 3190.091 kb on + strandat 3190.091 kb on + strandat 3190.092 kb on - strandat 3190.092 kb on - strandat 3190.130 kb on + strandat 3190.130 kb on + strandat 3190.131 kb on - strandat 3190.131 kb on - strandat 3190.131 kb on - strandat 3190.131 kb on - strandat 3190.131 kb on - strandat 3190.289 kb on + strandat 3190.289 kb on + strandat 3190.289 kb on + strandat 3190.290 kb on - strandat 3190.355 kb on - strand, within Pf1N1B4_2846at 3190.385 kb on + strand, within Pf1N1B4_2846at 3190.385 kb on + strand, within Pf1N1B4_2846at 3190.385 kb on + strand, within Pf1N1B4_2846at 3190.386 kb on - strand, within Pf1N1B4_2846at 3190.386 kb on - strand, within Pf1N1B4_2846at 3190.388 kb on + strand, within Pf1N1B4_2846at 3190.388 kb on + strand, within Pf1N1B4_2846at 3190.388 kb on + strand, within Pf1N1B4_2846at 3190.388 kb on + strand, within Pf1N1B4_2846at 3190.388 kb on + strand, within Pf1N1B4_2846at 3190.389 kb on - strand, within Pf1N1B4_2846at 3190.389 kb on - strand, within Pf1N1B4_2846at 3190.389 kb on - strand, within Pf1N1B4_2846at 3190.389 kb on - strand, within Pf1N1B4_2846at 3190.389 kb on - strand, within Pf1N1B4_2846at 3190.389 kb on - strand, within Pf1N1B4_2846at 3190.394 kb on + strand, within Pf1N1B4_2846at 3190.394 kb on + strand, within Pf1N1B4_2846at 3190.394 kb on + strand, within Pf1N1B4_2846at 3190.394 kb on + strand, within Pf1N1B4_2846at 3190.394 kb on + strand, within Pf1N1B4_2846at 3190.394 kb on + strand, within Pf1N1B4_2846at 3190.395 kb on - strand, within Pf1N1B4_2846at 3190.400 kb on + strand, within Pf1N1B4_2846at 3190.401 kb on - strand, within Pf1N1B4_2846at 3190.401 kb on - strand, within Pf1N1B4_2846at 3190.671 kb on + strand, within Pf1N1B4_2846at 3190.671 kb on + strand, within Pf1N1B4_2846at 3190.671 kb on + strand, within Pf1N1B4_2846at 3190.671 kb on + strand, within Pf1N1B4_2846at 3190.672 kb on - strand, within Pf1N1B4_2846at 3190.672 kb on - strand, within Pf1N1B4_2846at 3190.672 kb on - strand, within Pf1N1B4_2846at 3190.672 kb on - strand, within Pf1N1B4_2846at 3190.672 kb on - strand, within Pf1N1B4_2846at 3190.674 kb on + strand, within Pf1N1B4_2846at 3190.674 kb on + strand, within Pf1N1B4_2846at 3190.674 kb on + strand, within Pf1N1B4_2846at 3190.674 kb on + strand, within Pf1N1B4_2846at 3190.674 kb on + strand, within Pf1N1B4_2846at 3190.675 kb on - strand, within Pf1N1B4_2846at 3190.675 kb on - strand, within Pf1N1B4_2846at 3190.675 kb on - strand, within Pf1N1B4_2846at 3190.675 kb on - strand, within Pf1N1B4_2846at 3190.675 kb on - strand, within Pf1N1B4_2846at 3190.877 kb on + strand, within Pf1N1B4_2846at 3190.877 kb on + strand, within Pf1N1B4_2846at 3190.877 kb on + strand, within Pf1N1B4_2846at 3190.878 kb on - strand, within Pf1N1B4_2846at 3190.878 kb on - strand, within Pf1N1B4_2846at 3190.878 kb on - strand, within Pf1N1B4_2846at 3190.937 kb on + strand, within Pf1N1B4_2846at 3190.937 kb on + strand, within Pf1N1B4_2846at 3190.938 kb on - strand, within Pf1N1B4_2846

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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3,188,726 - Pf1N1B4_2843 0.73 +1.0
3,188,799 + +0.8
3,188,799 + -2.1
3,188,799 + +0.2
3,188,799 + +0.7
3,188,799 + -0.5
3,188,799 + +0.2
3,188,799 + +0.4
3,188,800 - +2.2
3,188,800 - -1.6
3,188,800 - +1.2
3,188,807 + -0.7
3,188,808 - -0.8
3,188,834 + -0.9
3,188,834 + -0.2
3,188,983 - +2.2
3,189,142 + -0.2
3,189,143 - -0.8
3,189,143 - +0.1
3,189,151 + +0.1
3,189,151 + +0.2
3,189,152 - -0.0
3,189,157 + -0.2
3,189,158 - -1.8
3,189,513 - +1.6
3,189,552 - +0.4
3,189,567 + +0.8
3,189,567 + +0.9
3,189,567 + +0.5
3,189,568 - -0.4
3,189,568 - -0.4
3,189,568 - -0.6
3,189,579 + -1.0
3,189,580 - +1.5
3,189,652 + +0.2
3,189,652 + -0.2
3,189,652 + -1.8
3,189,653 - -1.1
3,189,653 - +0.5
3,189,663 - +1.4
3,189,709 + +2.2
3,189,709 + -1.2
3,189,709 - -0.4
3,189,710 - -0.5
3,189,710 - -0.4
3,189,724 + +0.6
3,189,725 - -0.5
3,189,725 - -0.1
3,189,725 - -0.8
3,189,775 - Pf1N1B4_2845 0.19 -1.0
3,189,780 + Pf1N1B4_2845 0.20 -0.1
3,189,780 + Pf1N1B4_2845 0.20 -0.7
3,189,780 + Pf1N1B4_2845 0.20 +1.6
3,189,780 + Pf1N1B4_2845 0.20 -2.2
3,189,780 + Pf1N1B4_2845 0.20 -1.1
3,189,780 + +1.2
3,189,781 - Pf1N1B4_2845 0.21 -1.8
3,189,781 - Pf1N1B4_2845 0.21 -1.6
3,189,802 - Pf1N1B4_2845 0.28 -0.4
3,189,802 - Pf1N1B4_2845 0.28 -1.1
3,189,802 - Pf1N1B4_2845 0.28 -1.4
3,189,802 - Pf1N1B4_2845 0.28 -0.4
3,189,853 - Pf1N1B4_2845 0.45 -0.4
3,189,949 + Pf1N1B4_2845 0.77 -0.2
3,189,949 + Pf1N1B4_2845 0.77 -0.2
3,189,950 - Pf1N1B4_2845 0.77 -0.6
3,189,950 - Pf1N1B4_2845 0.77 -0.8
3,189,950 - Pf1N1B4_2845 0.77 -1.0
3,190,091 + +0.8
3,190,091 + -1.0
3,190,092 - -0.2
3,190,092 - -1.6
3,190,130 + +0.1
3,190,130 + +2.8
3,190,131 - -0.4
3,190,131 - -0.2
3,190,131 - -0.4
3,190,131 - -0.6
3,190,131 - +0.8
3,190,289 + +0.1
3,190,289 + +0.2
3,190,289 + -0.8
3,190,290 - -0.2
3,190,355 - Pf1N1B4_2846 0.12 -0.6
3,190,385 + Pf1N1B4_2846 0.13 -0.2
3,190,385 + Pf1N1B4_2846 0.13 -0.4
3,190,385 + Pf1N1B4_2846 0.13 -1.6
3,190,386 - Pf1N1B4_2846 0.13 -0.8
3,190,386 - Pf1N1B4_2846 0.13 -0.4
3,190,388 + Pf1N1B4_2846 0.13 -1.4
3,190,388 + Pf1N1B4_2846 0.13 -2.1
3,190,388 + Pf1N1B4_2846 0.13 +1.2
3,190,388 + Pf1N1B4_2846 0.13 -0.1
3,190,388 + Pf1N1B4_2846 0.13 +0.2
3,190,389 - Pf1N1B4_2846 0.13 -0.6
3,190,389 - Pf1N1B4_2846 0.13 +0.1
3,190,389 - Pf1N1B4_2846 0.13 -0.5
3,190,389 - Pf1N1B4_2846 0.13 -1.4
3,190,389 - Pf1N1B4_2846 0.13 +0.6
3,190,389 - Pf1N1B4_2846 0.13 -0.3
3,190,394 + Pf1N1B4_2846 0.13 +1.2
3,190,394 + Pf1N1B4_2846 0.13 +0.2
3,190,394 + Pf1N1B4_2846 0.13 -0.7
3,190,394 + Pf1N1B4_2846 0.13 -0.6
3,190,394 + Pf1N1B4_2846 0.13 +0.2
3,190,394 + Pf1N1B4_2846 0.13 +1.0
3,190,395 - Pf1N1B4_2846 0.13 -1.0
3,190,400 + Pf1N1B4_2846 0.13 -1.0
3,190,401 - Pf1N1B4_2846 0.13 -0.1
3,190,401 - Pf1N1B4_2846 0.13 -1.2
3,190,671 + Pf1N1B4_2846 0.22 +0.9
3,190,671 + Pf1N1B4_2846 0.22 +0.5
3,190,671 + Pf1N1B4_2846 0.22 -0.8
3,190,671 + Pf1N1B4_2846 0.22 -1.8
3,190,672 - Pf1N1B4_2846 0.22 -0.1
3,190,672 - Pf1N1B4_2846 0.22 -2.6
3,190,672 - Pf1N1B4_2846 0.22 -1.2
3,190,672 - Pf1N1B4_2846 0.22 +0.4
3,190,672 - Pf1N1B4_2846 0.22 +0.6
3,190,674 + Pf1N1B4_2846 0.22 -1.6
3,190,674 + Pf1N1B4_2846 0.22 +1.2
3,190,674 + Pf1N1B4_2846 0.22 +2.2
3,190,674 + Pf1N1B4_2846 0.22 +0.5
3,190,674 + Pf1N1B4_2846 0.22 +0.2
3,190,675 - Pf1N1B4_2846 0.22 -0.8
3,190,675 - Pf1N1B4_2846 0.22 -1.4
3,190,675 - Pf1N1B4_2846 0.22 -1.6
3,190,675 - Pf1N1B4_2846 0.22 +1.8
3,190,675 - Pf1N1B4_2846 0.22 -0.8
3,190,877 + Pf1N1B4_2846 0.29 -0.5
3,190,877 + Pf1N1B4_2846 0.29 +2.2
3,190,877 + Pf1N1B4_2846 0.29 +1.5
3,190,878 - Pf1N1B4_2846 0.29 +1.9
3,190,878 - Pf1N1B4_2846 0.29 +0.8
3,190,878 - Pf1N1B4_2846 0.29 +0.8
3,190,937 + Pf1N1B4_2846 0.31 -0.1
3,190,937 + Pf1N1B4_2846 0.31 +1.8
3,190,938 - Pf1N1B4_2846 0.31 -2.2

Or see this region's nucleotide sequence