Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_26

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
27,941	-				-0.0
28,007	+				+2.3
28,007	+				+0.3
28,007	+				+0.1
28,011	+				-0.9
28,012	-				-0.4
28,029	-				-0.0
28,064	+				-0.3
28,064	+				+0.2
28,064	+				-0.3
28,122	-				+0.3
28,355	-				+2.3
29,023	+		Pf1N1B4_26	0.41	-0.6
29,024	-		Pf1N1B4_26	0.41	-2.0
29,166	-		Pf1N1B4_26	0.48	-1.4
29,167	+		Pf1N1B4_26	0.48	-3.2
29,167	+		Pf1N1B4_26	0.48	-1.2
29,167	+		Pf1N1B4_26	0.48	+0.7
29,167	+		Pf1N1B4_26	0.48	-0.0
29,167	+		Pf1N1B4_26	0.48	-1.6
29,168	-		Pf1N1B4_26	0.48	-2.7
29,168	-				-1.3
29,168	-		Pf1N1B4_26	0.48	-1.6
29,168	-		Pf1N1B4_26	0.48	+0.4
29,236	+		Pf1N1B4_26	0.51	+0.2
29,401	+		Pf1N1B4_26	0.60	-0.3
29,488	+		Pf1N1B4_26	0.64	-1.3
29,616	-				+1.5
29,677	+		Pf1N1B4_26	0.73	-0.3
29,677	+		Pf1N1B4_26	0.73	-0.0
29,677	+		Pf1N1B4_26	0.73	-0.9
29,678	-		Pf1N1B4_26	0.73	-0.6
29,758	+		Pf1N1B4_26	0.77	-0.9
29,759	-		Pf1N1B4_26	0.77	-0.5
29,782	+		Pf1N1B4_26	0.78	-0.3
29,918	-		Pf1N1B4_26	0.85	-0.9
29,936	-		Pf1N1B4_26	0.86	-0.8
29,944	+		Pf1N1B4_26	0.87	+1.1
29,945	-		Pf1N1B4_26	0.87	-0.9
29,957	-		Pf1N1B4_26	0.87	+1.7
29,998	+		Pf1N1B4_26	0.89	-0.9
29,999	-		Pf1N1B4_26	0.89	-0.3
29,999	-		Pf1N1B4_26	0.89	-2.0
30,198	+				-0.3
30,215	+				+0.7
30,215	+				+0.1
30,216	-				-0.9
30,216	-				-0.2
30,216	-				+0.7
30,216	-				-0.9
30,216	-				-0.3
30,216	-				-0.6
30,216	-				-0.2
30,216	-				+1.3
30,216	-				+2.1
30,219	+				+0.0
30,219	+				+1.1
30,219	+				-0.6
30,220	-				-0.4
30,220	-				+0.7
30,220	-				+0.5
30,220	-				+1.5
30,220	-				+1.7
30,220	-				-1.3
30,220	-				+0.7
30,220	-				+0.4
30,220	-				+1.3
30,355	-				-2.3
30,464	+				-1.6
30,465	-				+0.6
30,466	+				-1.6
30,467	-				+1.2
30,467	-				-0.0
30,467	-				+0.1
30,467	-				+0.4
30,469	+				+2.9
30,469	+				+0.7
30,469	+				+0.7
30,469	+				-0.9
30,469	+				-1.4
30,469	+				-0.3
30,469	+				+0.4
30,470	-				+0.3
30,494	-				+1.3
30,551	+				+0.7
30,664	+				+0.5
30,778	+		Pf1N1B4_27	0.19	+1.1
31,006	+		Pf1N1B4_27	0.38	-0.6
31,007	-				-0.3