Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2488

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
2,820,290	+		Pf1N1B4_2487	0.33	+0.7
2,820,291	-		Pf1N1B4_2487	0.33	-0.5
2,820,401	+		Pf1N1B4_2487	0.44	-1.5
2,820,401	+		Pf1N1B4_2487	0.44	-0.0
2,820,402	-				-0.0
2,820,404	+		Pf1N1B4_2487	0.44	-1.7
2,820,404	+		Pf1N1B4_2487	0.44	-0.9
2,820,404	+		Pf1N1B4_2487	0.44	-1.3
2,820,404	+		Pf1N1B4_2487	0.44	-2.5
2,820,404	+		Pf1N1B4_2487	0.44	-1.0
2,820,404	+		Pf1N1B4_2487	0.44	-1.3
2,820,405	-		Pf1N1B4_2487	0.44	+0.3
2,820,405	-		Pf1N1B4_2487	0.44	-0.9
2,820,405	-		Pf1N1B4_2487	0.44	-0.7
2,820,405	-		Pf1N1B4_2487	0.44	+0.7
2,820,405	-		Pf1N1B4_2487	0.44	-1.9
2,820,437	+		Pf1N1B4_2487	0.47	-2.4
2,820,437	+		Pf1N1B4_2487	0.47	+0.7
2,820,437	+		Pf1N1B4_2487	0.47	-0.7
2,820,438	-		Pf1N1B4_2487	0.47	+0.3
2,820,460	+		Pf1N1B4_2487	0.49	-0.5
2,820,460	+		Pf1N1B4_2487	0.49	-0.7
2,820,460	+		Pf1N1B4_2487	0.49	+0.1
2,820,460	+		Pf1N1B4_2487	0.49	-1.6
2,820,464	+		Pf1N1B4_2487	0.50	-1.9
2,820,464	+		Pf1N1B4_2487	0.50	+1.0
2,820,491	+		Pf1N1B4_2487	0.52	-1.0
2,820,491	+		Pf1N1B4_2487	0.52	-1.7
2,820,491	+		Pf1N1B4_2487	0.52	-1.0
2,820,491	+		Pf1N1B4_2487	0.52	+0.9
2,820,491	+		Pf1N1B4_2487	0.52	-2.0
2,820,491	+		Pf1N1B4_2487	0.52	-1.5
2,820,491	+		Pf1N1B4_2487	0.52	+0.2
2,820,492	-		Pf1N1B4_2487	0.52	-0.0
2,820,977	+				-0.3
2,820,977	+				+1.7
2,820,977	+				-1.0
2,820,977	+				+0.3
2,820,977	+				+0.1
2,820,977	+				-1.0
2,820,977	+				+0.1
2,820,978	-				-0.3
2,820,978	-				+0.3
2,820,978	-				-0.5
2,820,978	-				+0.3
2,820,978	-				-2.0
2,821,002	-				-0.8
2,821,002	-				+1.0
2,821,002	-				-1.0
2,821,138	-				-1.2
2,821,138	-				-1.3
2,821,138	-				-2.5
2,821,138	-				-1.0
2,821,138	-				-0.7
2,821,233	-				-1.9
2,821,309	+		Pf1N1B4_2488	0.11	-1.5
2,821,309	+		Pf1N1B4_2488	0.11	-0.2
2,821,309	+		Pf1N1B4_2488	0.11	-1.7
2,821,319	+		Pf1N1B4_2488	0.12	-1.3
2,821,320	-		Pf1N1B4_2488	0.12	-1.1
2,821,499	+		Pf1N1B4_2488	0.27	+0.3
2,821,500	-		Pf1N1B4_2488	0.27	-1.7
2,821,500	-		Pf1N1B4_2488	0.27	-0.7
2,821,500	-		Pf1N1B4_2488	0.27	-1.9
2,821,500	-		Pf1N1B4_2488	0.27	-1.4
2,821,679	-		Pf1N1B4_2488	0.42	-0.0
2,821,964	+		Pf1N1B4_2488	0.66	-2.0
2,821,964	+		Pf1N1B4_2488	0.66	+0.6
2,821,964	+		Pf1N1B4_2488	0.66	+0.3
2,821,965	-		Pf1N1B4_2488	0.66	-0.3
2,821,965	-		Pf1N1B4_2488	0.66	-0.3
2,821,965	-		Pf1N1B4_2488	0.66	-1.4
2,821,965	-		Pf1N1B4_2488	0.66	-1.7
2,821,965	-		Pf1N1B4_2488	0.66	-2.0
2,821,965	-		Pf1N1B4_2488	0.66	-2.5
2,821,970	+		Pf1N1B4_2488	0.67	-2.1
2,821,970	+		Pf1N1B4_2488	0.67	-1.3
2,821,970	+		Pf1N1B4_2488	0.67	-1.0
2,821,970	+		Pf1N1B4_2488	0.67	-2.1
2,821,970	+		Pf1N1B4_2488	0.67	-1.8
2,821,971	-		Pf1N1B4_2488	0.67	-1.1
2,821,971	-		Pf1N1B4_2488	0.67	-0.4
2,821,971	-		Pf1N1B4_2488	0.67	-0.3
2,821,971	-		Pf1N1B4_2488	0.67	-1.3
2,821,971	-		Pf1N1B4_2488	0.67	+1.3
2,821,971	-		Pf1N1B4_2488	0.67	-1.2
2,821,971	-		Pf1N1B4_2488	0.67	+0.9
2,822,298	+				-1.0
2,822,298	+				-1.3
2,822,299	-				-1.9
2,822,299	-				-1.7
2,822,305	-				-1.8
2,822,305	-				-0.4
2,822,305	-				-1.9
2,822,305	-				-1.3
2,822,305	-				-1.5
2,822,305	-				-2.1
2,822,813	+		Pf1N1B4_2489	0.63	-1.0
2,822,813	+		Pf1N1B4_2489	0.63	+0.3
2,822,813	+				+0.3
2,822,813	+		Pf1N1B4_2489	0.63	-1.6
2,822,813	+		Pf1N1B4_2489	0.63	+0.3
2,822,813	+		Pf1N1B4_2489	0.63	+0.6
2,822,813	+		Pf1N1B4_2489	0.63	-2.0
2,822,813	+		Pf1N1B4_2489	0.63	+1.0
2,822,813	+		Pf1N1B4_2489	0.63	-1.0
2,822,813	+		Pf1N1B4_2489	0.63	+1.3
2,822,813	+		Pf1N1B4_2489	0.63	-1.5
2,822,814	-		Pf1N1B4_2489	0.63	+0.3
2,823,070	+				+1.3
2,823,070	+				+0.3
2,823,071	-				-2.1
2,823,071	-				-0.3
2,823,086	+				-1.1
2,823,086	+				+0.2
2,823,087	-				+0.3
2,823,163	+		Pf1N1B4_2490	0.11	+1.9
2,823,163	+		Pf1N1B4_2490	0.11	-1.1
2,823,163	+		Pf1N1B4_2490	0.11	-2.3
2,823,163	+		Pf1N1B4_2490	0.11	+1.3
2,823,164	-		Pf1N1B4_2490	0.11	-1.0
2,823,209	+		Pf1N1B4_2490	0.16	-1.7
2,823,209	+		Pf1N1B4_2490	0.16	-1.0
2,823,209	+		Pf1N1B4_2490	0.16	+0.1
2,823,210	-		Pf1N1B4_2490	0.16	-1.9
2,823,210	-		Pf1N1B4_2490	0.16	-1.5
2,823,210	-		Pf1N1B4_2490	0.16	+0.6