Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2479

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
2,812,323	+		Pf1N1B4_2478	0.89	-0.2
2,812,323	+		Pf1N1B4_2478	0.89	-0.5
2,812,323	+		Pf1N1B4_2478	0.89	-0.4
2,812,375	+				+0.1
2,812,376	-				-2.0
2,812,407	-				+0.3
2,812,635	+				+0.9
2,812,635	+				+0.5
2,812,636	-				-1.7
2,812,636	-				-0.7
2,812,652	+				+1.6
2,812,653	-				+0.9
2,812,653	-				-0.3
2,812,653	-				-0.8
2,812,658	+				+0.9
2,812,658	+				+1.9
2,812,658	+				+0.3
2,812,659	-				-1.0
2,812,659	-				+0.7
2,812,659	-				-1.7
2,812,767	+				-0.7
2,812,767	+				-0.5
2,812,768	-				+0.0
2,812,768	-				-1.1
2,812,771	+				+0.3
2,812,771	+				+0.5
2,812,772	-				+0.8
2,812,788	+				-0.1
2,812,789	-				+0.3
2,812,791	+				+0.7
2,812,792	-				-0.7
2,812,792	-				+0.0
2,812,823	+				+0.6
2,812,823	+				+1.0
2,812,823	+				-1.3
2,812,824	-				+0.1
2,812,824	-				+0.3
2,812,827	+				-2.0
2,812,827	+				-1.7
2,812,827	+				-0.3
2,812,828	-				-1.8
2,812,828	-				+1.7
2,812,925	+				-0.7
2,812,925	+				-0.3
2,812,926	-				-1.0
2,812,931	+				-1.1
2,812,931	+				+1.9
2,812,931	+				+0.1
2,812,931	+				+0.1
2,812,932	-				-0.7
2,813,017	-				-0.5
2,813,128	+				-1.8
2,813,128	+				-1.5
2,813,128	+				-0.3
2,813,128	+				-0.3
2,813,129	-				+1.3
2,813,129	-				-0.5
2,813,129	-				+0.0
2,813,129	-				-0.5
2,813,129	-				+0.7
2,813,129	-				-3.0
2,813,129	-				+0.1
2,813,129	-				-1.0
2,813,130	+				-1.2
2,813,130	+				-0.3
2,813,130	+				-1.5
2,813,130	+				+0.3
2,813,130	+				+0.6
2,813,130	+				+0.0
2,813,130	+				-0.8
2,813,130	+				+0.7
2,813,130	+				-0.7
2,813,131	-				+0.3
2,813,131	-				-0.0
2,813,131	-				+0.3
2,813,131	-				-0.7
2,813,131	-				+0.9
2,813,131	-				-2.3
2,813,131	-				+1.3
2,813,131	-				+0.5
2,813,143	-				-1.0
2,813,143	-				-0.7
2,813,188	-				-0.3
2,813,339	+		Pf1N1B4_2479	0.32	-1.5
2,813,352	+		Pf1N1B4_2479	0.34	+1.6
2,813,353	-		Pf1N1B4_2479	0.34	-1.3
2,813,541	+		Pf1N1B4_2479	0.71	-2.1
2,813,541	+		Pf1N1B4_2479	0.71	+0.7
2,813,542	-		Pf1N1B4_2479	0.71	+0.3
2,813,699	-				-1.0
2,813,707	+				-0.5
2,813,709	+				-1.7
2,813,709	+				+0.3
2,813,709	+				-1.4
2,813,709	+				+1.8
2,813,710	-				+0.0
2,813,710	-				+0.7
2,813,710	-				+0.3
2,813,929	-				-1.3
2,813,948	-				+0.0
2,813,948	-				-1.3
2,813,969	+				-0.5
2,813,969	+				-1.3
2,813,969	+				-0.3
2,813,970	-				-1.7
2,814,056	-		Pf1N1B4_2480	0.17	+0.3
2,814,056	-		Pf1N1B4_2480	0.17	+1.0
2,814,056	-		Pf1N1B4_2480	0.17	+0.9
2,814,079	+		Pf1N1B4_2480	0.19	-1.7
2,814,079	+		Pf1N1B4_2480	0.19	-0.7
2,814,080	-		Pf1N1B4_2480	0.19	-0.0
2,814,305	-				+0.3
2,814,305	-		Pf1N1B4_2480	0.45	-0.4
2,814,305	-		Pf1N1B4_2480	0.45	-2.8
2,814,363	+		Pf1N1B4_2480	0.51	+1.5
2,814,364	-		Pf1N1B4_2480	0.51	+0.6
2,814,364	-		Pf1N1B4_2480	0.51	-0.1
2,814,475	+		Pf1N1B4_2480	0.64	+0.5
2,814,475	+		Pf1N1B4_2480	0.64	+0.4
2,814,475	+		Pf1N1B4_2480	0.64	-0.3
2,814,475	+		Pf1N1B4_2480	0.64	-0.3
2,814,475	+		Pf1N1B4_2480	0.64	-0.1
2,814,476	-		Pf1N1B4_2480	0.64	-0.7
2,814,476	-		Pf1N1B4_2480	0.64	+1.1
2,814,476	-		Pf1N1B4_2480	0.64	-0.1
2,814,476	-		Pf1N1B4_2480	0.64	+0.7
2,814,476	-		Pf1N1B4_2480	0.64	+1.0
2,814,476	-		Pf1N1B4_2480	0.64	-1.0
2,814,476	-		Pf1N1B4_2480	0.64	+0.0
2,814,479	-		Pf1N1B4_2480	0.64	+1.3
2,814,526	+		Pf1N1B4_2480	0.70	-1.0
2,814,526	+		Pf1N1B4_2480	0.70	+0.9
2,814,526	+		Pf1N1B4_2480	0.70	-1.3
2,814,526	+		Pf1N1B4_2480	0.70	+0.1
2,814,526	+		Pf1N1B4_2480	0.70	+0.0
2,814,526	+		Pf1N1B4_2480	0.70	+1.3
2,814,526	+		Pf1N1B4_2480	0.70	-1.2
2,814,526	+		Pf1N1B4_2480	0.70	-1.0
2,814,526	+		Pf1N1B4_2480	0.70	+0.7
2,814,526	+		Pf1N1B4_2480	0.70	-0.8
2,814,527	-				+0.3
2,814,527	-		Pf1N1B4_2480	0.70	-0.4
2,814,527	-		Pf1N1B4_2480	0.70	+0.8
2,814,527	-		Pf1N1B4_2480	0.70	-1.1
2,814,527	-		Pf1N1B4_2480	0.70	+0.2
2,814,527	-		Pf1N1B4_2480	0.70	-0.5
2,814,527	-		Pf1N1B4_2480	0.70	-1.1
2,814,527	-		Pf1N1B4_2480	0.70	-0.7
2,814,527	-		Pf1N1B4_2480	0.70	-1.0
2,814,527	-		Pf1N1B4_2480	0.70	-0.0
2,814,527	-		Pf1N1B4_2480	0.70	+1.9