Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_243 and Pf1N1B4_244 overlap by 105 nucleotides Pf1N1B4_244 and Pf1N1B4_245 are separated by 219 nucleotides Pf1N1B4_245 and Pf1N1B4_246 are separated by 1 nucleotides Pf1N1B4_246 and Pf1N1B4_247 overlap by 4 nucleotides Pf1N1B4_247 and Pf1N1B4_248 are separated by 123 nucleotides
Pf1N1B4_243 - Ammonium transporter, at 301,651 to 302,925
_243
Pf1N1B4_244 - hypothetical protein, at 302,821 to 302,946
_244
Pf1N1B4_245 - Probable transmembrane protein, at 303,166 to 303,480
_245
Pf1N1B4_246 - Probable transmembrane protein, at 303,482 to 303,871
_246
Pf1N1B4_247 - FIG00956101: hypothetical protein, at 303,868 to 304,206
_247
Pf1N1B4_248 - EAL-domain protein, at 304,330 to 305,493
_248
Position (kb) 303
304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.588 kb on + strand, within Pf1N1B4_243 at 302.656 kb on + strand, within Pf1N1B4_243 at 302.656 kb on + strand, within Pf1N1B4_243 at 302.656 kb on + strand at 302.656 kb on + strand, within Pf1N1B4_243 at 302.657 kb on - strand, within Pf1N1B4_243 at 302.657 kb on - strand, within Pf1N1B4_243 at 302.657 kb on - strand at 302.658 kb on + strand, within Pf1N1B4_243 at 302.658 kb on + strand, within Pf1N1B4_243 at 302.658 kb on + strand, within Pf1N1B4_243 at 302.659 kb on - strand, within Pf1N1B4_243 at 302.659 kb on - strand, within Pf1N1B4_243 at 302.666 kb on + strand, within Pf1N1B4_243 at 302.666 kb on + strand, within Pf1N1B4_243 at 302.667 kb on - strand, within Pf1N1B4_243 at 302.820 kb on + strand at 302.820 kb on + strand at 302.820 kb on + strand at 302.821 kb on - strand at 303.008 kb on + strand at 303.009 kb on - strand at 303.079 kb on + strand at 303.080 kb on - strand at 303.104 kb on + strand at 303.105 kb on - strand at 303.128 kb on + strand at 303.128 kb on + strand at 303.129 kb on - strand at 303.160 kb on + strand at 303.397 kb on + strand, within Pf1N1B4_245 at 303.397 kb on + strand, within Pf1N1B4_245 at 303.482 kb on - strand at 303.482 kb on - strand at 303.716 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.752 kb on + strand, within Pf1N1B4_246 at 303.753 kb on - strand, within Pf1N1B4_246 at 304.204 kb on + strand at 304.247 kb on + strand at 304.315 kb on + strand at 304.315 kb on + strand at 304.316 kb on - strand at 304.318 kb on + strand at 304.318 kb on + strand at 304.319 kb on - strand at 304.319 kb on - strand at 304.319 kb on - strand at 304.574 kb on + strand, within Pf1N1B4_248 at 304.575 kb on - strand, within Pf1N1B4_248
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 302,588 + Pf1N1B4_243 0.73 -1.1 302,656 + Pf1N1B4_243 0.79 -0.6 302,656 + Pf1N1B4_243 0.79 -0.0 302,656 + -0.2 302,656 + Pf1N1B4_243 0.79 +0.2 302,657 - Pf1N1B4_243 0.79 +1.0 302,657 - Pf1N1B4_243 0.79 -0.0 302,657 - -0.2 302,658 + Pf1N1B4_243 0.79 -0.2 302,658 + Pf1N1B4_243 0.79 -0.8 302,658 + Pf1N1B4_243 0.79 -1.7 302,659 - Pf1N1B4_243 0.79 -0.2 302,659 - Pf1N1B4_243 0.79 +1.8 302,666 + Pf1N1B4_243 0.80 -0.7 302,666 + Pf1N1B4_243 0.80 +0.5 302,667 - Pf1N1B4_243 0.80 -0.6 302,820 + -1.8 302,820 + +0.2 302,820 + +1.5 302,821 - -0.1 303,008 + -0.2 303,009 - -0.2 303,079 + -1.2 303,080 - +1.3 303,104 + +0.8 303,105 - +0.4 303,128 + +0.8 303,128 + -0.8 303,129 - -1.3 303,160 + +2.1 303,397 + Pf1N1B4_245 0.73 -0.2 303,397 + Pf1N1B4_245 0.73 +1.3 303,482 - +0.0 303,482 - +1.3 303,716 + Pf1N1B4_246 0.60 -1.2 303,752 + Pf1N1B4_246 0.69 +0.8 303,752 + Pf1N1B4_246 0.69 -0.6 303,752 + Pf1N1B4_246 0.69 -0.8 303,752 + Pf1N1B4_246 0.69 +1.1 303,752 + Pf1N1B4_246 0.69 -1.3 303,752 + Pf1N1B4_246 0.69 -0.6 303,752 + Pf1N1B4_246 0.69 -1.5 303,752 + Pf1N1B4_246 0.69 -1.6 303,752 + Pf1N1B4_246 0.69 -0.2 303,752 + Pf1N1B4_246 0.69 -1.2 303,753 - Pf1N1B4_246 0.69 +1.4 304,204 + -0.2 304,247 + -0.4 304,315 + +0.2 304,315 + +0.1 304,316 - -1.4 304,318 + +0.0 304,318 + -0.2 304,319 - +0.8 304,319 - -0.2 304,319 - +0.2 304,574 + Pf1N1B4_248 0.21 +0.0 304,575 - Pf1N1B4_248 0.21 +0.4
Or see this region's nucleotide sequence