Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2370

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
2,684,999	-				+1.4
2,685,000	+				+0.5
2,685,000	+				+0.0
2,685,000	+				-1.6
2,685,000	+				-1.0
2,685,000	+				-2.3
2,685,001	-				-1.1
2,685,001	-				-0.6
2,685,035	+				-1.8
2,685,035	+				+0.5
2,685,035	+				+0.8
2,685,036	-				-1.0
2,685,036	-				+0.2
2,685,036	-				+1.9
2,685,068	+				-2.3
2,685,068	+				-0.2
2,685,477	+		Pf1N1B4_2369	0.58	-0.3
2,685,477	+		Pf1N1B4_2369	0.58	-0.2
2,685,477	+		Pf1N1B4_2369	0.58	+0.7
2,685,477	+		Pf1N1B4_2369	0.58	-0.2
2,685,478	-		Pf1N1B4_2369	0.58	+0.7
2,685,478	-		Pf1N1B4_2369	0.58	+0.1
2,685,478	-		Pf1N1B4_2369	0.58	-0.2
2,685,695	+		Pf1N1B4_2369	0.86	-0.7
2,685,771	+				-0.4
2,685,771	+				-0.6
2,685,771	+				+0.6
2,685,932	+				+1.6
2,685,932	+				-0.2
2,685,932	+				+1.4
2,685,933	-				-0.5
2,685,933	-				-1.2
2,685,933	-				+0.6
2,686,022	+		Pf1N1B4_2370	0.12	-0.3
2,686,061	+		Pf1N1B4_2370	0.17	+0.6
2,686,061	+		Pf1N1B4_2370	0.17	+1.9
2,686,062	-		Pf1N1B4_2370	0.17	-1.0
2,686,062	-		Pf1N1B4_2370	0.17	+1.6
2,686,192	-		Pf1N1B4_2370	0.31	-0.2
2,686,409	+		Pf1N1B4_2370	0.55	+1.4
2,686,410	-		Pf1N1B4_2370	0.55	-0.5
2,686,514	+		Pf1N1B4_2370	0.66	+0.4
2,686,515	-		Pf1N1B4_2370	0.66	+1.8
2,686,625	+		Pf1N1B4_2370	0.78	-1.5
2,686,625	+		Pf1N1B4_2370	0.78	+0.9
2,686,625	+		Pf1N1B4_2370	0.78	+2.9
2,686,625	+		Pf1N1B4_2370	0.78	-0.6
2,686,625	+		Pf1N1B4_2370	0.78	-0.2
2,686,626	-		Pf1N1B4_2370	0.78	+1.4
2,686,626	-		Pf1N1B4_2370	0.78	-1.6
2,686,626	-		Pf1N1B4_2370	0.78	-0.2
2,686,626	-		Pf1N1B4_2370	0.78	+0.7
2,686,840	+				+1.4
2,686,841	-				-0.6
2,686,949	-				-0.6
2,686,995	+				+0.4
2,686,995	+				+2.4
2,686,995	+				+1.6
2,687,006	+				+0.1
2,687,006	+				+0.9
2,687,007	-				-0.5
2,687,017	+				+0.3
2,687,017	+				+1.3
2,687,018	-				-1.8
2,687,018	-				-0.2
2,687,018	-				+1.4
2,687,028	+				-1.6
2,687,066	+				+0.9
2,687,066	+				-0.3
2,687,066	+				+0.4
2,687,066	+				+1.4
2,687,066	+				-0.6
2,687,066	+				-0.6
2,687,066	+				-1.8
2,687,066	+				-0.5
2,687,066	+				+1.4
2,687,066	+				-0.9
2,687,066	+				-0.1
2,687,066	+				+0.1
2,687,066	+				-0.8
2,687,066	+				-0.2
2,687,066	+				+0.2
2,687,066	+				+0.2
2,687,066	+				+1.1
2,687,067	-				+0.4
2,687,067	-				-1.0
2,687,067	-				-0.4
2,687,067	-				-0.6
2,687,067	-				-0.2
2,687,067	-				+1.7
2,687,067	-				-0.7
2,687,067	-				-2.5
2,687,067	-				-2.0
2,687,067	-				+0.4
2,687,067	-				-0.2
2,687,067	-				+1.4
2,687,067	-				-0.5
2,687,067	-				+1.1
2,687,067	-				+0.8
2,687,067	-				-0.2
2,687,067	-				-1.5
2,687,067	-				-1.5
2,687,072	+				+0.2
2,687,072	+				+0.1
2,687,072	+				+0.8
2,687,072	+				-0.6
2,687,072	+				+0.4
2,687,072	+				-1.8
2,687,072	+				+1.4
2,687,072	+				-0.5
2,687,072	+				+0.5
2,687,072	+				-1.4
2,687,073	-				-0.2
2,687,073	-				+0.1
2,687,073	-				-0.5
2,687,073	-				+1.4
2,687,201	+		Pf1N1B4_2371	0.21	-0.5
2,687,225	+		Pf1N1B4_2371	0.25	-0.6
2,687,226	-		Pf1N1B4_2371	0.25	-0.5
2,687,244	-		Pf1N1B4_2371	0.28	-0.4
2,687,244	-		Pf1N1B4_2371	0.28	+0.0
2,687,303	+		Pf1N1B4_2371	0.38	+0.6
2,687,304	-		Pf1N1B4_2371	0.38	+2.7
2,687,324	+		Pf1N1B4_2371	0.41	-0.6
2,687,325	-		Pf1N1B4_2371	0.41	+0.6
2,687,325	-		Pf1N1B4_2371	0.41	-0.2
2,687,462	+		Pf1N1B4_2371	0.64	+0.4
2,687,462	+		Pf1N1B4_2371	0.64	-1.5
2,687,463	-		Pf1N1B4_2371	0.64	-0.8
2,687,505	+		Pf1N1B4_2371	0.71	-2.1
2,687,561	+		Pf1N1B4_2371	0.80	+0.0
2,687,561	+				+0.4
2,687,561	+		Pf1N1B4_2371	0.80	+0.0
2,687,561	+		Pf1N1B4_2371	0.80	-0.5
2,687,561	+		Pf1N1B4_2371	0.80	-1.2
2,687,561	+		Pf1N1B4_2371	0.80	-0.6
2,687,561	+		Pf1N1B4_2371	0.80	-0.8
2,687,561	+		Pf1N1B4_2371	0.80	+0.5
2,687,561	+		Pf1N1B4_2371	0.80	+0.4
2,687,562	-				+0.4
2,687,562	-		Pf1N1B4_2371	0.80	-2.0
2,687,675	+				-0.5
2,687,675	+				+0.7
2,687,675	+				+2.9
2,687,675	+				-0.3
2,687,676	-				-1.5
2,687,676	-				+0.0
2,687,684	+				+1.1
2,687,684	+				+0.6
2,687,684	+				-1.5
2,687,700	+				-2.6
2,687,700	+				-0.8
2,687,701	-				+0.1
2,687,701	-				-1.5