Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2213

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
2,525,666	+		Pf1N1B4_2211	0.54	-0.0
2,525,667	-		Pf1N1B4_2211	0.54	+0.5
2,525,667	-		Pf1N1B4_2211	0.54	-0.8
2,525,798	+		Pf1N1B4_2211	0.74	-0.2
2,525,798	+		Pf1N1B4_2211	0.74	-0.0
2,525,798	+		Pf1N1B4_2211	0.74	+2.0
2,525,798	+		Pf1N1B4_2211	0.74	+1.1
2,525,798	+		Pf1N1B4_2211	0.74	+0.8
2,525,799	-		Pf1N1B4_2211	0.75	+1.7
2,525,799	-		Pf1N1B4_2211	0.75	-0.6
2,525,799	-		Pf1N1B4_2211	0.75	+1.4
2,525,799	-		Pf1N1B4_2211	0.75	+0.4
2,525,880	+		Pf1N1B4_2211	0.87	+1.4
2,525,982	+				+2.0
2,525,982	+				+0.4
2,525,982	+				+0.5
2,525,982	+				-0.2
2,525,982	+				-1.1
2,525,982	+				+1.4
2,525,982	+				-0.4
2,525,982	+				-0.3
2,525,982	+				-1.2
2,525,982	+				-0.4
2,525,982	+				+0.1
2,525,982	+				+0.4
2,525,982	+				+0.9
2,525,982	+				-1.2
2,525,982	+				+1.3
2,525,982	+				+2.1
2,525,982	+				+0.2
2,525,982	+				-1.1
2,525,983	-				-0.3
2,525,983	-				+0.5
2,525,983	-				+1.4
2,525,983	-				-0.8
2,525,983	-				-0.6
2,525,983	-				+0.9
2,525,983	-				-0.1
2,525,983	-				+0.7
2,525,983	-				-0.5
2,525,983	-				+0.5
2,525,986	+				+0.4
2,525,987	-				+0.1
2,525,987	-				-1.6
2,525,987	-				-2.4
2,525,987	-				+0.9
2,525,987	-				+0.7
2,525,987	-				+0.4
2,526,040	+				+2.4
2,526,040	+		Pf1N1B4_2212	0.12	+0.4
2,526,040	+		Pf1N1B4_2212	0.12	+0.4
2,526,040	+		Pf1N1B4_2212	0.12	+0.8
2,526,040	+		Pf1N1B4_2212	0.12	+1.5
2,526,041	-		Pf1N1B4_2212	0.12	+0.1
2,526,041	-		Pf1N1B4_2212	0.12	-0.1
2,526,041	-		Pf1N1B4_2212	0.12	-0.0
2,526,041	-		Pf1N1B4_2212	0.12	+0.4
2,526,041	-		Pf1N1B4_2212	0.12	-0.9
2,526,041	-		Pf1N1B4_2212	0.12	-1.9
2,526,061	+		Pf1N1B4_2212	0.15	-1.2
2,526,061	+		Pf1N1B4_2212	0.15	-2.2
2,526,061	+		Pf1N1B4_2212	0.15	+0.2
2,526,061	+		Pf1N1B4_2212	0.15	+0.2
2,526,061	+		Pf1N1B4_2212	0.15	+2.7
2,526,061	+		Pf1N1B4_2212	0.15	+1.0
2,526,062	-		Pf1N1B4_2212	0.15	+2.4
2,526,062	-		Pf1N1B4_2212	0.15	+0.6
2,526,062	-		Pf1N1B4_2212	0.15	-0.6
2,526,084	-		Pf1N1B4_2212	0.18	-1.4
2,526,084	-		Pf1N1B4_2212	0.18	-0.5
2,526,323	-		Pf1N1B4_2212	0.54	+0.2
2,526,323	-		Pf1N1B4_2212	0.54	+0.4
2,526,393	+		Pf1N1B4_2212	0.64	-0.9
2,526,454	+		Pf1N1B4_2212	0.73	-0.7
2,526,455	-		Pf1N1B4_2212	0.74	-1.6
2,526,455	-		Pf1N1B4_2212	0.74	-0.3
2,526,625	+				-0.9
2,526,625	+				+0.9
2,526,626	-				-1.6
2,526,632	+				+0.5
2,526,632	+				-0.9
2,526,632	+				+0.3
2,526,632	+				-0.9
2,526,633	-				-0.2
2,526,633	-				-0.5
2,526,633	-				+0.4
2,526,633	-				-0.4
2,526,633	-				-1.8
2,526,785	+		Pf1N1B4_2213	0.17	-1.3
2,526,786	-		Pf1N1B4_2213	0.17	+1.4
2,526,786	-		Pf1N1B4_2213	0.17	-0.6
2,526,786	-		Pf1N1B4_2213	0.17	-0.3
2,526,902	+		Pf1N1B4_2213	0.32	-2.7
2,526,902	+		Pf1N1B4_2213	0.32	+0.9
2,526,903	-		Pf1N1B4_2213	0.32	-1.3
2,527,073	+		Pf1N1B4_2213	0.54	-2.2
2,527,073	+		Pf1N1B4_2213	0.54	+0.1
2,527,073	+		Pf1N1B4_2213	0.54	+0.1
2,527,074	-		Pf1N1B4_2213	0.54	-1.4
2,527,074	-		Pf1N1B4_2213	0.54	-1.4
2,527,074	-		Pf1N1B4_2213	0.54	-1.4
2,527,074	-		Pf1N1B4_2213	0.54	+1.4
2,527,424	+				+0.8
2,527,424	+				-2.2
2,527,425	-				-0.7
2,527,425	-				+0.1
2,527,551	+				+0.1
2,527,648	+				-0.0
2,527,649	-				+1.1
2,527,649	-				+2.4
2,527,654	+				-0.4
2,527,654	+				+0.6
2,527,654	+				+1.0
2,527,654	+				+1.8
2,527,654	+				-0.6
2,527,654	+				+0.3
2,527,654	+				-0.8
2,527,654	+				-1.6
2,527,654	+				-0.6
2,527,654	+				-0.4
2,527,654	+				-1.9
2,527,654	+				+0.4
2,527,655	-				-1.2
2,527,655	-				-0.9
2,527,881	-		Pf1N1B4_2214	0.26	-0.2
2,528,234	-		Pf1N1B4_2214	0.76	-0.5
2,528,282	+		Pf1N1B4_2214	0.83	-1.2
2,528,282	+		Pf1N1B4_2214	0.83	-0.6
2,528,283	-		Pf1N1B4_2214	0.83	-0.9
2,528,283	-		Pf1N1B4_2214	0.83	+0.1
2,528,283	-		Pf1N1B4_2214	0.83	+0.5
2,528,283	-		Pf1N1B4_2214	0.83	+1.7
2,528,410	+				-0.8
2,528,411	-				-0.9
2,528,411	-				+0.2
2,528,411	-				-0.5
2,528,411	-				+1.0
2,528,411	-				+0.9
2,528,411	-				+2.4
2,528,434	+				-1.2
2,528,435	-				+0.1