Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_203 and Pf1N1B4_204 are separated by 204 nucleotides Pf1N1B4_204 and Pf1N1B4_205 are separated by 81 nucleotides
Pf1N1B4_203 - ABC transporter in pyoverdin gene cluster, periplasmic component, at 249,917 to 250,888
_203
Pf1N1B4_204 - FIG006220: Hypothetical MbtH-like protein, at 251,093 to 251,320
_204
Pf1N1B4_205 - Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76), at 251,402 to 252,814
_205
Position (kb) 251
252 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.103 kb on + strand, within Pf1N1B4_203 at 250.103 kb on + strand, within Pf1N1B4_203 at 250.104 kb on - strand, within Pf1N1B4_203 at 250.194 kb on - strand, within Pf1N1B4_203 at 250.226 kb on - strand, within Pf1N1B4_203 at 250.313 kb on - strand, within Pf1N1B4_203 at 250.500 kb on + strand, within Pf1N1B4_203 at 250.501 kb on - strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.737 kb on + strand, within Pf1N1B4_203 at 250.738 kb on - strand, within Pf1N1B4_203 at 250.956 kb on + strand at 250.956 kb on + strand at 251.173 kb on - strand, within Pf1N1B4_204 at 251.238 kb on + strand, within Pf1N1B4_204 at 251.239 kb on - strand at 251.239 kb on - strand, within Pf1N1B4_204 at 251.310 kb on - strand at 251.339 kb on + strand at 251.339 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.373 kb on + strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.374 kb on - strand at 251.863 kb on - strand, within Pf1N1B4_205 at 252.002 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.150 kb on + strand, within Pf1N1B4_205 at 252.151 kb on - strand, within Pf1N1B4_205 at 252.211 kb on - strand, within Pf1N1B4_205
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM remove 250,103 + Pf1N1B4_203 0.19 -0.3 250,103 + Pf1N1B4_203 0.19 -0.3 250,104 - Pf1N1B4_203 0.19 -0.3 250,194 - Pf1N1B4_203 0.28 -1.0 250,226 - Pf1N1B4_203 0.32 +1.1 250,313 - Pf1N1B4_203 0.41 -1.4 250,500 + Pf1N1B4_203 0.60 +0.5 250,501 - Pf1N1B4_203 0.60 -1.3 250,737 + Pf1N1B4_203 0.84 -1.8 250,737 + Pf1N1B4_203 0.84 +0.3 250,737 + Pf1N1B4_203 0.84 +0.3 250,738 - Pf1N1B4_203 0.84 -1.3 250,956 + +0.1 250,956 + -1.2 251,173 - Pf1N1B4_204 0.35 -1.8 251,238 + Pf1N1B4_204 0.64 -0.7 251,239 - +0.3 251,239 - Pf1N1B4_204 0.64 -1.1 251,310 - +0.3 251,339 + +0.0 251,339 + +1.1 251,373 + -0.7 251,373 + -0.6 251,373 + -0.1 251,373 + -1.0 251,373 + +0.4 251,374 - -0.0 251,374 - +0.3 251,374 - +2.0 251,374 - -1.2 251,374 - +0.3 251,374 - +1.0 251,374 - +0.2 251,374 - +0.8 251,863 - Pf1N1B4_205 0.33 +0.6 252,002 + Pf1N1B4_205 0.42 -1.2 252,150 + Pf1N1B4_205 0.53 -0.2 252,150 + Pf1N1B4_205 0.53 +0.8 252,150 + Pf1N1B4_205 0.53 -0.1 252,151 - Pf1N1B4_205 0.53 -1.2 252,211 - Pf1N1B4_205 0.57 -0.2
Or see this region's nucleotide sequence