Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1889

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
2,160,698	+		Pf1N1B4_1888	0.46	+0.7
2,160,698	+				+2.5
2,160,699	-		Pf1N1B4_1888	0.46	+0.8
2,160,794	+		Pf1N1B4_1888	0.53	+0.5
2,160,794	+		Pf1N1B4_1888	0.53	-0.5
2,160,794	+		Pf1N1B4_1888	0.53	-1.5
2,160,794	+		Pf1N1B4_1888	0.53	+0.8
2,160,794	+		Pf1N1B4_1888	0.53	+0.9
2,160,794	+		Pf1N1B4_1888	0.53	-0.8
2,160,795	-		Pf1N1B4_1888	0.53	-0.8
2,160,795	-		Pf1N1B4_1888	0.53	-1.1
2,160,898	-				-0.1
2,161,038	-		Pf1N1B4_1888	0.71	+0.0
2,161,074	-		Pf1N1B4_1888	0.74	-0.1
2,161,321	+				-0.5
2,161,321	+				-0.8
2,161,321	+				+1.5
2,161,321	+				-0.5
2,161,322	-				+1.1
2,161,322	-				+1.5
2,161,322	-				+0.2
2,161,322	-				-0.2
2,161,322	-				+0.5
2,161,322	-				-0.1
2,161,325	+				-1.8
2,161,325	+				+1.1
2,161,325	+				+1.2
2,161,326	-				-0.2
2,161,326	-				+0.8
2,161,326	-				-1.2
2,161,326	-				+1.9
2,161,326	-				-0.4
2,161,536	+				+0.2
2,161,536	+				+1.2
2,161,539	+				-0.4
2,161,540	-				+0.9
2,161,540	-				+0.2
2,161,581	-				-2.3
2,161,589	-				+0.4
2,161,627	+				+0.2
2,161,628	-				+0.3
2,161,628	-				+0.4
2,162,004	+		Pf1N1B4_1889	0.31	+1.9
2,162,004	+		Pf1N1B4_1889	0.31	+1.4
2,162,004	+		Pf1N1B4_1889	0.31	+1.6
2,162,004	+		Pf1N1B4_1889	0.31	-0.1
2,162,004	+		Pf1N1B4_1889	0.31	+0.3
2,162,004	+		Pf1N1B4_1889	0.31	+0.8
2,162,004	+		Pf1N1B4_1889	0.31	+1.3
2,162,004	+		Pf1N1B4_1889	0.31	+0.8
2,162,004	+		Pf1N1B4_1889	0.31	+1.0
2,162,005	-		Pf1N1B4_1889	0.31	+0.8
2,162,005	-		Pf1N1B4_1889	0.31	-0.5
2,162,005	-		Pf1N1B4_1889	0.31	+0.3
2,162,005	-		Pf1N1B4_1889	0.31	+2.5
2,162,005	-		Pf1N1B4_1889	0.31	+1.3
2,162,005	-		Pf1N1B4_1889	0.31	+0.1
2,162,005	-		Pf1N1B4_1889	0.31	+1.9
2,162,005	-		Pf1N1B4_1889	0.31	+0.7
2,162,055	+		Pf1N1B4_1889	0.35	+0.5
2,162,055	+		Pf1N1B4_1889	0.35	+0.4
2,162,055	+		Pf1N1B4_1889	0.35	+0.7
2,162,056	-		Pf1N1B4_1889	0.35	+0.3
2,162,056	-		Pf1N1B4_1889	0.35	+0.5
2,162,056	-		Pf1N1B4_1889	0.35	+0.4
2,162,056	-		Pf1N1B4_1889	0.35	+0.5
2,162,056	-		Pf1N1B4_1889	0.35	+0.3
2,162,056	-		Pf1N1B4_1889	0.35	-0.0
2,162,099	+		Pf1N1B4_1889	0.39	+0.3
2,162,099	+		Pf1N1B4_1889	0.39	+1.2
2,162,099	+		Pf1N1B4_1889	0.39	+1.1
2,162,099	+		Pf1N1B4_1889	0.39	+0.7
2,162,099	+		Pf1N1B4_1889	0.39	-0.8
2,162,100	-		Pf1N1B4_1889	0.39	+1.1
2,162,100	-		Pf1N1B4_1889	0.39	-0.1
2,162,240	+		Pf1N1B4_1889	0.50	-0.2
2,162,240	+		Pf1N1B4_1889	0.50	+0.6
2,162,241	-		Pf1N1B4_1889	0.50	+0.7
2,162,241	-		Pf1N1B4_1889	0.50	+1.1
2,162,241	-		Pf1N1B4_1889	0.50	+0.2
2,162,241	-		Pf1N1B4_1889	0.50	-1.2
2,162,385	+		Pf1N1B4_1889	0.62	+1.8
2,162,385	+		Pf1N1B4_1889	0.62	-1.7
2,162,386	-		Pf1N1B4_1889	0.62	+1.2
2,162,386	-		Pf1N1B4_1889	0.62	+0.4
2,162,402	+		Pf1N1B4_1889	0.63	+0.5
2,162,402	+		Pf1N1B4_1889	0.63	+0.6
2,162,403	-		Pf1N1B4_1889	0.63	+1.4
2,162,403	-		Pf1N1B4_1889	0.63	+1.4
2,162,462	+		Pf1N1B4_1889	0.68	+0.8
2,162,462	+		Pf1N1B4_1889	0.68	+0.8
2,162,463	-		Pf1N1B4_1889	0.68	+1.0
2,162,664	+		Pf1N1B4_1889	0.85	+0.4
2,162,665	-		Pf1N1B4_1889	0.85	+0.8
2,162,723	+		Pf1N1B4_1889	0.90	+1.2
2,162,723	+		Pf1N1B4_1889	0.90	+0.3
2,162,723	+		Pf1N1B4_1889	0.90	+0.9
2,162,723	+		Pf1N1B4_1889	0.90	-2.3
2,162,723	+		Pf1N1B4_1889	0.90	+0.4
2,162,723	+		Pf1N1B4_1889	0.90	+1.1
2,162,723	+		Pf1N1B4_1889	0.90	-0.1
2,162,723	+		Pf1N1B4_1889	0.90	+1.1
2,162,723	+		Pf1N1B4_1889	0.90	+0.5
2,162,723	+		Pf1N1B4_1889	0.90	+0.0
2,162,723	+		Pf1N1B4_1889	0.90	+1.2
2,162,723	+		Pf1N1B4_1889	0.90	+0.3
2,162,723	+		Pf1N1B4_1889	0.90	+0.1
2,162,723	+		Pf1N1B4_1889	0.90	+0.8
2,162,723	+		Pf1N1B4_1889	0.90	+1.3
2,162,723	+		Pf1N1B4_1889	0.90	+1.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.2
2,162,723	+		Pf1N1B4_1889	0.90	+0.8
2,162,723	+		Pf1N1B4_1889	0.90	+0.6
2,162,723	+		Pf1N1B4_1889	0.90	+0.7
2,162,723	+		Pf1N1B4_1889	0.90	+1.2
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	+0.1
2,162,723	+		Pf1N1B4_1889	0.90	+0.6
2,162,724	-		Pf1N1B4_1889	0.90	+0.6
2,162,724	-		Pf1N1B4_1889	0.90	+1.5
2,162,724	-		Pf1N1B4_1889	0.90	+1.0
2,162,724	-		Pf1N1B4_1889	0.90	+1.4
2,162,724	-		Pf1N1B4_1889	0.90	+1.8
2,162,724	-		Pf1N1B4_1889	0.90	+0.5
2,162,724	-		Pf1N1B4_1889	0.90	+0.7
2,162,724	-		Pf1N1B4_1889	0.90	+0.5
2,162,724	-		Pf1N1B4_1889	0.90	+1.2
2,162,724	-		Pf1N1B4_1889	0.90	+1.9
2,162,724	-		Pf1N1B4_1889	0.90	+1.8
2,162,724	-		Pf1N1B4_1889	0.90	+0.5
2,162,724	-		Pf1N1B4_1889	0.90	+0.7
2,162,724	-		Pf1N1B4_1889	0.90	-1.0
2,162,724	-		Pf1N1B4_1889	0.90	+1.2
2,162,724	-		Pf1N1B4_1889	0.90	+0.3
2,162,724	-		Pf1N1B4_1889	0.90	-0.4
2,162,724	-		Pf1N1B4_1889	0.90	+1.6
2,162,724	-		Pf1N1B4_1889	0.90	-0.5
2,162,724	-		Pf1N1B4_1889	0.90	+1.4
2,162,724	-		Pf1N1B4_1889	0.90	-0.1
2,162,724	-		Pf1N1B4_1889	0.90	+0.2
2,162,724	-		Pf1N1B4_1889	0.90	+0.9
2,162,724	-		Pf1N1B4_1889	0.90	+1.8
2,162,724	-		Pf1N1B4_1889	0.90	+0.8
2,162,724	-		Pf1N1B4_1889	0.90	+1.8
2,162,724	-		Pf1N1B4_1889	0.90	+0.9
2,162,724	-		Pf1N1B4_1889	0.90	+0.4
2,162,724	-		Pf1N1B4_1889	0.90	-1.0
2,162,727	+		Pf1N1B4_1889	0.90	+1.1
2,162,727	+		Pf1N1B4_1889	0.90	+0.6
2,162,727	+		Pf1N1B4_1889	0.90	+1.0
2,162,727	+		Pf1N1B4_1889	0.90	+0.4
2,162,728	-		Pf1N1B4_1889	0.90	+0.7
2,162,728	-				+1.5
2,162,728	-		Pf1N1B4_1889	0.90	+0.5
2,162,728	-		Pf1N1B4_1889	0.90	+0.9
2,162,728	-		Pf1N1B4_1889	0.90	+0.6
2,162,738	+				+0.0
2,162,738	+				+0.3
2,162,738	+				+1.5
2,162,738	+				-0.0
2,162,739	-				+1.3
2,162,739	-				+1.5
2,162,739	-				+0.5
2,162,739	-				+1.5
2,162,739	-				+0.7
2,162,739	-				-0.5
2,162,739	-				+0.1
2,162,739	-				+1.3
2,162,739	-				+0.1
2,162,739	-				+0.8
2,162,834	+				-0.8
2,162,918	+				-0.1
2,162,953	+				-0.9
2,162,953	+				+0.3
2,162,953	+				+0.8
2,162,953	+				-0.1
2,162,953	+				-0.8
2,162,953	+				-0.7
2,162,953	+				+1.2
2,162,953	+				-0.9
2,162,953	+				+0.5
2,162,953	+				-0.2
2,162,953	+				-0.5
2,162,953	+				-0.2
2,162,953	+				-0.4
2,162,953	+				+0.5
2,162,953	+				+1.2
2,162,953	+				+0.8
2,162,953	+				+1.5
2,162,954	-				-0.1
2,162,954	-				-1.8
2,162,954	-				-1.1
2,162,972	+				+1.5
2,162,973	-				-1.3
2,162,973	-				+0.0
2,162,973	-				-0.1
2,163,201	-		Pf1N1B4_1890	0.37	+1.0
2,163,255	+		Pf1N1B4_1890	0.45	-0.7
2,163,255	+		Pf1N1B4_1890	0.45	-1.7
2,163,255	+		Pf1N1B4_1890	0.45	-2.2
2,163,256	-		Pf1N1B4_1890	0.45	-0.5
2,163,256	-		Pf1N1B4_1890	0.45	-2.3
2,163,256	-		Pf1N1B4_1890	0.45	+0.5
2,163,362	+		Pf1N1B4_1890	0.62	+0.2
2,163,362	+		Pf1N1B4_1890	0.62	+1.1
2,163,363	-		Pf1N1B4_1890	0.63	-0.1
2,163,363	-		Pf1N1B4_1890	0.63	-0.1
2,163,363	-		Pf1N1B4_1890	0.63	-0.6
2,163,509	+		Pf1N1B4_1890	0.86	+0.5
2,163,510	-		Pf1N1B4_1890	0.86	-0.1
2,163,634	+				-0.5
2,163,791	+		Pf1N1B4_1891	0.21	-1.1
2,163,792	-		Pf1N1B4_1891	0.21	-0.4