Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_184

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_183 and Pf1N1B4_184 are separated by 157 nucleotidesPf1N1B4_184 and Pf1N1B4_185 are separated by 11 nucleotides Pf1N1B4_183 - Major facilitator family transporter, at 225,982 to 227,283 _183 Pf1N1B4_184 - Chromosome initiation inhibitor, at 227,441 to 228,400 _184 Pf1N1B4_185 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 228,412 to 230,304 _185 Position (kb) 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 226.494 kb on - strand, within Pf1N1B4_183at 226.505 kb on + strand, within Pf1N1B4_183at 226.505 kb on + strand, within Pf1N1B4_183at 226.506 kb on - strand, within Pf1N1B4_183at 226.506 kb on - strand, within Pf1N1B4_183at 226.839 kb on - strand, within Pf1N1B4_183at 226.839 kb on - strandat 226.960 kb on - strand, within Pf1N1B4_183at 227.201 kb on + strandat 227.201 kb on + strandat 227.202 kb on - strandat 227.202 kb on - strandat 227.202 kb on - strandat 227.208 kb on - strandat 227.217 kb on - strandat 227.275 kb on - strandat 227.298 kb on + strandat 227.298 kb on + strandat 227.298 kb on + strandat 227.298 kb on + strandat 227.298 kb on + strandat 227.299 kb on - strandat 227.299 kb on - strandat 227.299 kb on - strandat 227.299 kb on - strandat 227.299 kb on - strandat 227.302 kb on + strandat 227.302 kb on + strandat 227.302 kb on + strandat 227.303 kb on - strandat 227.305 kb on - strandat 227.318 kb on + strandat 227.358 kb on + strandat 227.358 kb on + strandat 227.359 kb on - strandat 227.359 kb on - strandat 227.364 kb on + strandat 227.409 kb on + strandat 227.412 kb on + strandat 227.427 kb on + strandat 227.440 kb on + strandat 227.456 kb on - strandat 227.516 kb on + strandat 227.516 kb on + strandat 227.517 kb on - strandat 227.517 kb on - strandat 227.807 kb on + strand, within Pf1N1B4_184at 227.967 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.985 kb on - strand, within Pf1N1B4_184at 227.991 kb on - strand, within Pf1N1B4_184at 228.179 kb on + strand, within Pf1N1B4_184at 228.179 kb on + strand, within Pf1N1B4_184at 228.231 kb on + strand, within Pf1N1B4_184at 228.306 kb on + strandat 228.306 kb on + strandat 228.306 kb on + strandat 228.306 kb on + strandat 228.307 kb on - strandat 228.379 kb on + strandat 228.414 kb on - strandat 228.452 kb on + strandat 228.453 kb on - strandat 228.647 kb on + strand, within Pf1N1B4_185at 228.648 kb on - strand, within Pf1N1B4_185at 228.757 kb on + strand, within Pf1N1B4_185at 228.757 kb on + strand, within Pf1N1B4_185at 228.758 kb on - strand, within Pf1N1B4_185at 228.808 kb on + strand, within Pf1N1B4_185at 228.809 kb on - strand, within Pf1N1B4_185at 228.945 kb on - strand, within Pf1N1B4_185at 228.945 kb on - strand, within Pf1N1B4_185at 228.945 kb on - strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.095 kb on - strand, within Pf1N1B4_185at 229.137 kb on - strand, within Pf1N1B4_185at 229.137 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.214 kb on + strandat 229.214 kb on + strand, within Pf1N1B4_185at 229.218 kb on + strand, within Pf1N1B4_185at 229.218 kb on + strand, within Pf1N1B4_185at 229.218 kb on + strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.241 kb on + strand, within Pf1N1B4_185at 229.398 kb on - strand, within Pf1N1B4_185at 229.398 kb on - strand, within Pf1N1B4_185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
remove
226,494 - Pf1N1B4_183 0.39 -0.3
226,505 + Pf1N1B4_183 0.40 +1.2
226,505 + Pf1N1B4_183 0.40 -0.8
226,506 - Pf1N1B4_183 0.40 -0.1
226,506 - Pf1N1B4_183 0.40 -1.8
226,839 - Pf1N1B4_183 0.66 +1.1
226,839 - +0.3
226,960 - Pf1N1B4_183 0.75 +0.2
227,201 + +0.7
227,201 + -0.3
227,202 - +0.2
227,202 - +0.0
227,202 - +0.7
227,208 - +1.7
227,217 - -1.6
227,275 - -1.3
227,298 + +0.4
227,298 + +0.0
227,298 + -0.3
227,298 + +0.3
227,298 + -1.6
227,299 - +1.1
227,299 - +0.7
227,299 - +0.8
227,299 - -0.5
227,299 - -0.8
227,302 + +0.0
227,302 + -0.1
227,302 + -0.3
227,303 - +0.2
227,305 - +1.4
227,318 + -1.1
227,358 + -0.5
227,358 + -0.6
227,359 - +1.7
227,359 - -0.6
227,364 + -0.6
227,409 + -0.5
227,412 + +1.3
227,427 + -0.3
227,440 + -0.6
227,456 - -0.8
227,516 + -0.2
227,516 + +0.7
227,517 - -0.6
227,517 - +0.7
227,807 + Pf1N1B4_184 0.38 -1.0
227,967 + Pf1N1B4_184 0.55 -1.6
227,984 + Pf1N1B4_184 0.57 -0.3
227,984 + Pf1N1B4_184 0.57 -1.6
227,984 + Pf1N1B4_184 0.57 -2.1
227,984 + Pf1N1B4_184 0.57 -0.8
227,985 - Pf1N1B4_184 0.57 -0.1
227,991 - Pf1N1B4_184 0.57 -2.8
228,179 + Pf1N1B4_184 0.77 -1.6
228,179 + Pf1N1B4_184 0.77 -2.1
228,231 + Pf1N1B4_184 0.82 -2.1
228,306 + -0.8
228,306 + -2.1
228,306 + -0.3
228,306 + -1.6
228,307 - -2.1
228,379 + -0.1
228,414 - -0.6
228,452 + +1.3
228,453 - -1.1
228,647 + Pf1N1B4_185 0.12 -1.0
228,648 - Pf1N1B4_185 0.12 -0.1
228,757 + Pf1N1B4_185 0.18 -2.2
228,757 + Pf1N1B4_185 0.18 +0.7
228,758 - Pf1N1B4_185 0.18 +2.3
228,808 + Pf1N1B4_185 0.21 -0.1
228,809 - Pf1N1B4_185 0.21 -0.8
228,945 - Pf1N1B4_185 0.28 -1.1
228,945 - Pf1N1B4_185 0.28 -0.3
228,945 - Pf1N1B4_185 0.28 +0.2
229,094 + Pf1N1B4_185 0.36 -2.1
229,094 + Pf1N1B4_185 0.36 -2.6
229,094 + Pf1N1B4_185 0.36 +0.1
229,094 + Pf1N1B4_185 0.36 +1.5
229,095 - Pf1N1B4_185 0.36 -0.4
229,137 - Pf1N1B4_185 0.38 -1.1
229,137 - Pf1N1B4_185 0.38 -0.3
229,143 - Pf1N1B4_185 0.39 +0.1
229,143 - Pf1N1B4_185 0.39 +0.7
229,143 - Pf1N1B4_185 0.39 +4.1
229,143 - Pf1N1B4_185 0.39 +0.1
229,143 - Pf1N1B4_185 0.39 +1.1
229,143 - Pf1N1B4_185 0.39 -1.3
229,143 - Pf1N1B4_185 0.39 -1.4
229,143 - Pf1N1B4_185 0.39 +0.2
229,143 - Pf1N1B4_185 0.39 +0.7
229,143 - Pf1N1B4_185 0.39 -0.8
229,214 + +0.7
229,214 + Pf1N1B4_185 0.42 -0.8
229,218 + Pf1N1B4_185 0.43 +0.7
229,218 + Pf1N1B4_185 0.43 +0.5
229,218 + Pf1N1B4_185 0.43 +1.5
229,219 - Pf1N1B4_185 0.43 +0.7
229,219 - Pf1N1B4_185 0.43 +0.2
229,219 - Pf1N1B4_185 0.43 -1.0
229,219 - Pf1N1B4_185 0.43 +0.0
229,219 - Pf1N1B4_185 0.43 -0.3
229,241 + Pf1N1B4_185 0.44 -0.8
229,398 - Pf1N1B4_185 0.52 -1.3
229,398 - Pf1N1B4_185 0.52 +0.6

Or see this region's nucleotide sequence