Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1676

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
1,919,911	+		Pf1N1B4_1675	0.37	+1.0
1,919,911	+		Pf1N1B4_1675	0.37	+0.7
1,919,911	+		Pf1N1B4_1675	0.37	-0.2
1,919,912	-		Pf1N1B4_1675	0.37	+2.4
1,919,912	-		Pf1N1B4_1675	0.37	-1.5
1,919,912	-		Pf1N1B4_1675	0.37	-1.6
1,919,912	-		Pf1N1B4_1675	0.37	-0.2
1,920,539	+				-0.2
1,920,539	+				+1.6
1,920,539	+				+0.1
1,920,540	-				-1.2
1,920,551	+				-0.6
1,920,663	+				-0.6
1,920,663	+				-0.9
1,920,663	+				-1.2
1,920,663	+				-0.9
1,920,663	+				-0.1
1,920,663	+				+0.2
1,920,663	+				+0.7
1,920,663	+				+0.1
1,920,663	+				-2.1
1,920,663	+				-1.6
1,920,663	+				-2.3
1,920,664	-				+0.8
1,920,664	-				+0.1
1,920,664	-				-0.4
1,920,664	-				-2.3
1,920,664	-				-0.4
1,920,664	-				+1.4
1,920,665	+				-1.4
1,920,665	+				+0.2
1,920,666	-				-0.6
1,920,666	-				+0.2
1,920,666	-				+0.2
1,920,666	-				-1.6
1,920,676	+				+0.6
1,920,708	-				-1.8
1,920,743	+				-0.4
1,920,852	-				-0.4
1,920,964	+		Pf1N1B4_1676	0.14	-2.4
1,920,964	+		Pf1N1B4_1676	0.14	+0.6
1,920,965	-		Pf1N1B4_1676	0.14	-0.2
1,920,965	-				-0.9
1,920,965	-		Pf1N1B4_1676	0.14	-1.6
1,921,042	+		Pf1N1B4_1676	0.19	-0.4
1,921,096	+		Pf1N1B4_1676	0.23	-1.6
1,921,097	-		Pf1N1B4_1676	0.23	-0.4
1,921,204	+		Pf1N1B4_1676	0.30	-1.2
1,921,204	+		Pf1N1B4_1676	0.30	+1.4
1,921,205	-		Pf1N1B4_1676	0.30	-1.2
1,921,205	-		Pf1N1B4_1676	0.30	-0.2
1,921,282	+		Pf1N1B4_1676	0.35	+0.8
1,921,282	+		Pf1N1B4_1676	0.35	-1.2
1,921,282	+		Pf1N1B4_1676	0.35	-1.2
1,921,283	-		Pf1N1B4_1676	0.35	-1.2
1,921,676	-		Pf1N1B4_1676	0.60	-1.0
1,921,892	-		Pf1N1B4_1676	0.75	-0.1
1,921,892	-		Pf1N1B4_1676	0.75	+0.1
1,922,195	-				-1.2
1,922,195	-				+0.8
1,922,310	-				+0.6
1,922,379	+				-1.0
1,922,379	+				-0.8
1,922,411	+				+0.7
1,922,411	+				-1.4
1,922,411	+				+1.1
1,922,412	-				+0.4
1,922,451	+		Pf1N1B4_1677	0.13	+0.4
1,922,451	+		Pf1N1B4_1677	0.13	+0.4
1,922,451	+		Pf1N1B4_1677	0.13	+2.2
1,922,560	+		Pf1N1B4_1677	0.23	+0.7
1,922,561	-		Pf1N1B4_1677	0.24	-0.2
1,922,931	+		Pf1N1B4_1677	0.58	-0.5
1,922,932	-		Pf1N1B4_1677	0.58	-1.2
1,922,932	-		Pf1N1B4_1677	0.58	+0.1
1,922,932	-		Pf1N1B4_1677	0.58	-0.2
1,922,943	+		Pf1N1B4_1677	0.59	-0.2
1,922,943	+		Pf1N1B4_1677	0.59	-0.2
1,922,943	+		Pf1N1B4_1677	0.59	-0.6
1,922,943	+		Pf1N1B4_1677	0.59	+1.4
1,922,943	+		Pf1N1B4_1677	0.59	-0.6
1,922,944	-		Pf1N1B4_1677	0.60	-0.6
1,922,945	+		Pf1N1B4_1677	0.60	+0.1
1,922,946	-		Pf1N1B4_1677	0.60	+0.2
1,922,946	-		Pf1N1B4_1677	0.60	+0.4
1,922,946	-		Pf1N1B4_1677	0.60	-0.2
1,922,946	-		Pf1N1B4_1677	0.60	+0.7
1,923,006	+		Pf1N1B4_1677	0.65	-0.4
1,923,006	+		Pf1N1B4_1677	0.65	+0.1
1,923,006	+		Pf1N1B4_1677	0.65	-0.8
1,923,006	+				+0.4
1,923,006	+		Pf1N1B4_1677	0.65	+0.3
1,923,006	+		Pf1N1B4_1677	0.65	+1.7
1,923,006	+		Pf1N1B4_1677	0.65	-1.2
1,923,006	+		Pf1N1B4_1677	0.65	+1.6
1,923,006	+		Pf1N1B4_1677	0.65	-2.4
1,923,007	-		Pf1N1B4_1677	0.65	+0.2
1,923,007	-		Pf1N1B4_1677	0.65	-0.9
1,923,007	-		Pf1N1B4_1677	0.65	+1.2
1,923,007	-		Pf1N1B4_1677	0.65	-0.8
1,923,007	-		Pf1N1B4_1677	0.65	+0.2
1,923,007	-		Pf1N1B4_1677	0.65	-0.2
1,923,007	-		Pf1N1B4_1677	0.65	-0.1
1,923,007	-		Pf1N1B4_1677	0.65	-0.7
1,923,057	+		Pf1N1B4_1677	0.70	+0.7
1,923,057	+		Pf1N1B4_1677	0.70	-1.8
1,923,057	+		Pf1N1B4_1677	0.70	-0.4
1,923,057	+		Pf1N1B4_1677	0.70	+0.4
1,923,058	-		Pf1N1B4_1677	0.70	-2.1
1,923,058	-		Pf1N1B4_1677	0.70	+1.4
1,923,058	-		Pf1N1B4_1677	0.70	+0.4
1,923,058	-		Pf1N1B4_1677	0.70	-0.4
1,923,058	-		Pf1N1B4_1677	0.70	-0.2
1,923,058	-		Pf1N1B4_1677	0.70	+0.7
1,923,097	+		Pf1N1B4_1677	0.74	+0.9