Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1636

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1635 and Pf1N1B4_1636 are separated by 37 nucleotidesPf1N1B4_1636 and Pf1N1B4_1637 are separated by 6 nucleotidesPf1N1B4_1637 and Pf1N1B4_1638 are separated by 84 nucleotides Pf1N1B4_1635 - Hydrolases of the alpha/beta superfamily, at 1,879,183 to 1,880,157 _1635 Pf1N1B4_1636 - FIG00954739: hypothetical protein, at 1,880,195 to 1,880,611 _1636 Pf1N1B4_1637 - FIG00954739: hypothetical protein, at 1,880,618 to 1,881,076 _1637 Pf1N1B4_1638 - hypothetical protein, at 1,881,161 to 1,881,487 _1638 Position (kb) 1880 1881Strain fitness (log2 ratio) -2 -1 0 1 2at 1879.235 kb on + strandat 1879.235 kb on + strandat 1879.235 kb on + strandat 1879.236 kb on - strandat 1879.239 kb on + strandat 1879.359 kb on + strand, within Pf1N1B4_1635at 1879.359 kb on + strand, within Pf1N1B4_1635at 1879.360 kb on - strand, within Pf1N1B4_1635at 1879.381 kb on + strand, within Pf1N1B4_1635at 1879.381 kb on + strand, within Pf1N1B4_1635at 1879.399 kb on + strand, within Pf1N1B4_1635at 1879.432 kb on + strand, within Pf1N1B4_1635at 1879.432 kb on + strand, within Pf1N1B4_1635at 1879.432 kb on + strand, within Pf1N1B4_1635at 1879.432 kb on + strand, within Pf1N1B4_1635at 1879.432 kb on + strand, within Pf1N1B4_1635at 1879.432 kb on + strand, within Pf1N1B4_1635at 1879.432 kb on + strandat 1879.432 kb on + strand, within Pf1N1B4_1635at 1879.433 kb on - strand, within Pf1N1B4_1635at 1879.433 kb on - strand, within Pf1N1B4_1635at 1879.433 kb on - strand, within Pf1N1B4_1635at 1879.433 kb on - strand, within Pf1N1B4_1635at 1879.433 kb on - strand, within Pf1N1B4_1635at 1879.433 kb on - strand, within Pf1N1B4_1635at 1879.433 kb on - strand, within Pf1N1B4_1635at 1879.663 kb on + strand, within Pf1N1B4_1635at 1879.750 kb on + strand, within Pf1N1B4_1635at 1879.750 kb on + strand, within Pf1N1B4_1635at 1879.751 kb on - strand, within Pf1N1B4_1635at 1879.751 kb on - strand, within Pf1N1B4_1635at 1879.799 kb on + strand, within Pf1N1B4_1635at 1879.800 kb on - strand, within Pf1N1B4_1635at 1879.936 kb on + strand, within Pf1N1B4_1635at 1879.972 kb on + strand, within Pf1N1B4_1635at 1879.972 kb on + strand, within Pf1N1B4_1635at 1879.986 kb on + strand, within Pf1N1B4_1635at 1879.986 kb on + strand, within Pf1N1B4_1635at 1879.986 kb on + strand, within Pf1N1B4_1635at 1879.986 kb on + strand, within Pf1N1B4_1635at 1879.986 kb on + strand, within Pf1N1B4_1635at 1879.987 kb on - strand, within Pf1N1B4_1635at 1879.987 kb on - strand, within Pf1N1B4_1635at 1880.065 kb on + strandat 1880.066 kb on - strandat 1880.066 kb on - strandat 1880.079 kb on - strandat 1880.079 kb on - strandat 1880.079 kb on - strandat 1880.079 kb on - strandat 1880.180 kb on + strandat 1880.558 kb on + strand, within Pf1N1B4_1636at 1880.559 kb on - strand, within Pf1N1B4_1636at 1880.750 kb on + strand, within Pf1N1B4_1637at 1880.750 kb on + strand, within Pf1N1B4_1637at 1880.751 kb on - strand, within Pf1N1B4_1637at 1880.751 kb on - strand, within Pf1N1B4_1637at 1880.751 kb on - strand, within Pf1N1B4_1637at 1881.141 kb on - strandat 1881.163 kb on - strandat 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.216 kb on + strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.217 kb on - strand, within Pf1N1B4_1638at 1881.252 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.279 kb on + strand, within Pf1N1B4_1638at 1881.280 kb on - strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.291 kb on + strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.292 kb on - strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.295 kb on + strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.296 kb on - strand, within Pf1N1B4_1638at 1881.455 kb on - strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.478 kb on + strandat 1881.479 kb on - strandat 1881.479 kb on - strandat 1881.532 kb on + strandat 1881.533 kb on - strandat 1881.533 kb on - strandat 1881.567 kb on + strandat 1881.568 kb on - strandat 1881.568 kb on - strandat 1881.568 kb on - strandat 1881.578 kb on + strandat 1881.578 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 5 mM
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1,879,235 + -0.6
1,879,235 + +0.7
1,879,235 + -1.4
1,879,236 - +0.7
1,879,239 + -1.9
1,879,359 + Pf1N1B4_1635 0.18 -0.2
1,879,359 + Pf1N1B4_1635 0.18 -0.8
1,879,360 - Pf1N1B4_1635 0.18 -0.4
1,879,381 + Pf1N1B4_1635 0.20 +0.1
1,879,381 + Pf1N1B4_1635 0.20 -1.1
1,879,399 + Pf1N1B4_1635 0.22 -0.8
1,879,432 + Pf1N1B4_1635 0.26 -0.6
1,879,432 + Pf1N1B4_1635 0.26 -0.4
1,879,432 + Pf1N1B4_1635 0.26 +0.6
1,879,432 + Pf1N1B4_1635 0.26 -0.4
1,879,432 + Pf1N1B4_1635 0.26 -0.2
1,879,432 + Pf1N1B4_1635 0.26 -1.4
1,879,432 + +0.4
1,879,432 + Pf1N1B4_1635 0.26 +0.4
1,879,433 - Pf1N1B4_1635 0.26 -0.8
1,879,433 - Pf1N1B4_1635 0.26 +1.2
1,879,433 - Pf1N1B4_1635 0.26 -0.5
1,879,433 - Pf1N1B4_1635 0.26 +0.1
1,879,433 - Pf1N1B4_1635 0.26 +0.1
1,879,433 - Pf1N1B4_1635 0.26 -0.2
1,879,433 - Pf1N1B4_1635 0.26 -0.0
1,879,663 + Pf1N1B4_1635 0.49 -0.0
1,879,750 + Pf1N1B4_1635 0.58 -0.4
1,879,750 + Pf1N1B4_1635 0.58 -1.9
1,879,751 - Pf1N1B4_1635 0.58 -1.4
1,879,751 - Pf1N1B4_1635 0.58 -0.1
1,879,799 + Pf1N1B4_1635 0.63 -1.4
1,879,800 - Pf1N1B4_1635 0.63 -0.6
1,879,936 + Pf1N1B4_1635 0.77 -1.4
1,879,972 + Pf1N1B4_1635 0.81 +0.3
1,879,972 + Pf1N1B4_1635 0.81 -0.9
1,879,986 + Pf1N1B4_1635 0.82 -1.8
1,879,986 + Pf1N1B4_1635 0.82 +2.0
1,879,986 + Pf1N1B4_1635 0.82 -0.7
1,879,986 + Pf1N1B4_1635 0.82 -2.2
1,879,986 + Pf1N1B4_1635 0.82 -0.4
1,879,987 - Pf1N1B4_1635 0.82 -0.4
1,879,987 - Pf1N1B4_1635 0.82 +0.2
1,880,065 + -0.0
1,880,066 - +0.4
1,880,066 - +0.4
1,880,079 - +0.8
1,880,079 - +0.2
1,880,079 - +0.4
1,880,079 - -1.2
1,880,180 + -0.9
1,880,558 + Pf1N1B4_1636 0.87 +0.5
1,880,559 - Pf1N1B4_1636 0.87 +0.6
1,880,750 + Pf1N1B4_1637 0.29 -0.0
1,880,750 + Pf1N1B4_1637 0.29 -1.4
1,880,751 - Pf1N1B4_1637 0.29 -0.7
1,880,751 - Pf1N1B4_1637 0.29 +1.4
1,880,751 - Pf1N1B4_1637 0.29 -1.7
1,881,141 - -0.8
1,881,163 - +0.2
1,881,216 + Pf1N1B4_1638 0.17 -0.2
1,881,216 + Pf1N1B4_1638 0.17 +2.0
1,881,216 + Pf1N1B4_1638 0.17 -0.2
1,881,216 + Pf1N1B4_1638 0.17 -1.4
1,881,216 + Pf1N1B4_1638 0.17 +0.1
1,881,216 + Pf1N1B4_1638 0.17 +1.0
1,881,217 - Pf1N1B4_1638 0.17 +1.4
1,881,217 - Pf1N1B4_1638 0.17 -0.2
1,881,217 - Pf1N1B4_1638 0.17 +0.4
1,881,217 - Pf1N1B4_1638 0.17 +1.0
1,881,217 - Pf1N1B4_1638 0.17 -1.2
1,881,217 - Pf1N1B4_1638 0.17 -0.6
1,881,217 - Pf1N1B4_1638 0.17 -0.4
1,881,217 - Pf1N1B4_1638 0.17 -1.8
1,881,217 - Pf1N1B4_1638 0.17 +1.2
1,881,217 - Pf1N1B4_1638 0.17 -0.4
1,881,217 - Pf1N1B4_1638 0.17 +0.4
1,881,252 + Pf1N1B4_1638 0.28 +0.6
1,881,279 + Pf1N1B4_1638 0.36 -1.2
1,881,279 + Pf1N1B4_1638 0.36 +0.4
1,881,279 + Pf1N1B4_1638 0.36 -0.9
1,881,279 + Pf1N1B4_1638 0.36 +0.4
1,881,280 - Pf1N1B4_1638 0.36 -1.4
1,881,291 + Pf1N1B4_1638 0.40 -0.5
1,881,291 + Pf1N1B4_1638 0.40 -0.8
1,881,291 + Pf1N1B4_1638 0.40 +0.5
1,881,291 + Pf1N1B4_1638 0.40 +0.4
1,881,292 - Pf1N1B4_1638 0.40 -1.2
1,881,292 - Pf1N1B4_1638 0.40 -0.2
1,881,292 - Pf1N1B4_1638 0.40 -0.9
1,881,292 - Pf1N1B4_1638 0.40 -0.0
1,881,292 - Pf1N1B4_1638 0.40 +0.6
1,881,295 + Pf1N1B4_1638 0.41 +0.1
1,881,295 + Pf1N1B4_1638 0.41 +0.9
1,881,295 + Pf1N1B4_1638 0.41 -1.3
1,881,295 + Pf1N1B4_1638 0.41 -1.2
1,881,295 + Pf1N1B4_1638 0.41 -0.9
1,881,296 - Pf1N1B4_1638 0.41 -0.9
1,881,296 - Pf1N1B4_1638 0.41 +0.1
1,881,296 - Pf1N1B4_1638 0.41 -1.4
1,881,296 - Pf1N1B4_1638 0.41 -0.8
1,881,296 - Pf1N1B4_1638 0.41 -0.2
1,881,455 - +0.4
1,881,478 + +0.4
1,881,478 + +0.4
1,881,478 + +1.1
1,881,478 + -1.8
1,881,478 + -0.2
1,881,478 + +0.1
1,881,478 + -0.6
1,881,478 + +0.1
1,881,479 - +0.8
1,881,479 - -1.7
1,881,532 + -1.4
1,881,533 - +0.4
1,881,533 - -0.4
1,881,567 + +0.4
1,881,568 - -0.2
1,881,568 - -0.4
1,881,568 - -0.2
1,881,578 + -0.4
1,881,578 + +0.7

Or see this region's nucleotide sequence