Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1423

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
1,631,021	+				-0.5
1,631,021	+				-2.3
1,631,022	-				-0.8
1,631,024	+				+0.7
1,631,025	-				+0.7
1,631,025	-				+1.3
1,631,025	-				+0.6
1,631,075	-				-0.7
1,631,075	-				+0.6
1,631,075	-				+0.3
1,631,075	-				-0.3
1,631,075	-				-2.0
1,631,075	-				+0.7
1,631,083	-				+0.1
1,631,083	-				+0.2
1,631,083	-				+0.7
1,631,121	-				+1.0
1,631,144	-				+0.3
1,631,144	-				-0.3
1,631,194	+				-1.0
1,631,195	-				-0.1
1,631,195	-				+0.1
1,631,195	-				+0.2
1,631,195	-				+0.8
1,631,195	-				-1.0
1,631,195	-				+1.7
1,631,195	-				+1.3
1,631,195	-				+1.3
1,631,248	+				+0.3
1,631,248	+				+0.7
1,631,249	-				-1.3
1,631,249	-				-1.0
1,631,249	-				-0.9
1,631,458	+		Pf1N1B4_1422	0.54	+0.7
1,631,458	+		Pf1N1B4_1422	0.54	-0.7
1,631,458	+		Pf1N1B4_1422	0.54	+1.9
1,631,458	+		Pf1N1B4_1422	0.54	+1.3
1,631,458	+		Pf1N1B4_1422	0.54	-0.8
1,631,458	+		Pf1N1B4_1422	0.54	+0.3
1,631,458	+		Pf1N1B4_1422	0.54	-1.3
1,631,459	-		Pf1N1B4_1422	0.54	+1.1
1,631,459	-		Pf1N1B4_1422	0.54	+2.3
1,631,459	-		Pf1N1B4_1422	0.54	-0.7
1,631,459	-		Pf1N1B4_1422	0.54	+0.3
1,631,467	+		Pf1N1B4_1422	0.56	+0.6
1,631,468	-		Pf1N1B4_1422	0.56	+0.0
1,631,468	-		Pf1N1B4_1422	0.56	-1.3
1,631,468	-		Pf1N1B4_1422	0.56	+0.0
1,631,676	+				+0.6
1,631,677	-				-0.4
1,631,679	+				-1.7
1,631,679	+				+0.3
1,631,679	+				-0.7
1,631,679	+				-1.1
1,631,680	-				-0.3
1,631,680	-				+2.9
1,631,683	+				-0.7
1,631,683	+				+2.6
1,631,683	+				-0.2
1,631,683	+				+0.8
1,631,683	+				-2.3
1,631,683	+				-1.0
1,631,683	+				+0.0
1,631,683	+				-0.7
1,631,683	+				+0.3
1,631,683	+				+0.4
1,631,683	+				-0.3
1,631,684	-				-0.3
1,631,684	-				-1.0
1,631,684	-				-1.3
1,631,878	+		Pf1N1B4_1423	0.24	+2.9
1,631,878	+		Pf1N1B4_1423	0.24	-0.5
1,631,878	+		Pf1N1B4_1423	0.24	+2.6
1,631,879	-		Pf1N1B4_1423	0.24	-0.4
1,631,879	-		Pf1N1B4_1423	0.24	-1.0
1,631,879	-		Pf1N1B4_1423	0.24	+1.8
1,631,942	-		Pf1N1B4_1423	0.30	+1.5
1,631,942	-		Pf1N1B4_1423	0.30	+0.5
1,631,942	-		Pf1N1B4_1423	0.30	+0.7
1,632,002	+		Pf1N1B4_1423	0.37	-0.5
1,632,024	+		Pf1N1B4_1423	0.39	-1.5
1,632,025	-		Pf1N1B4_1423	0.39	+1.0
1,632,179	+		Pf1N1B4_1423	0.55	+0.4
1,632,179	+		Pf1N1B4_1423	0.55	-0.7
1,632,213	-		Pf1N1B4_1423	0.59	+0.5
1,632,213	-		Pf1N1B4_1423	0.59	+1.1
1,632,213	-		Pf1N1B4_1423	0.59	-0.7
1,632,213	-		Pf1N1B4_1423	0.59	+0.9
1,632,241	+		Pf1N1B4_1423	0.62	+0.6
1,632,242	-		Pf1N1B4_1423	0.62	+0.3
1,632,242	-		Pf1N1B4_1423	0.62	-0.5
1,632,341	+		Pf1N1B4_1423	0.72	+1.3
1,632,342	-		Pf1N1B4_1423	0.72	-0.7
1,632,415	+		Pf1N1B4_1423	0.80	-1.5
1,632,416	-		Pf1N1B4_1423	0.80	-0.2
1,632,523	+				-0.3
1,632,523	+				-1.0
1,632,523	+				+0.6
1,632,523	+				-0.6
1,632,523	+				-0.3
1,632,523	+				-1.3
1,632,523	+				+0.3
1,632,524	-				+0.1
1,632,524	-				-1.0
1,632,524	-				-0.3
1,632,524	-				-0.3
1,632,524	-				+0.3
1,632,524	-				+0.3
1,632,524	-				-1.3
1,632,524	-				+1.6
1,632,524	-				+0.0
1,632,524	-				+0.3
1,632,524	-				-1.0
1,632,524	-				-0.3
1,632,524	-				-1.0
1,632,524	-				+1.7
1,632,524	-				-0.8
1,632,524	-				-2.1
1,632,526	+				-1.8
1,632,526	+				+2.3
1,632,527	-				+0.0
1,632,527	-				-0.5
1,632,527	-				-0.5
1,632,574	+				-0.5
1,632,575	-				-0.3
1,632,575	-				+0.0
1,632,575	-				-1.7
1,632,578	-				-1.5
1,632,620	+				-1.6
1,632,620	+				+0.4
1,632,620	+				-0.2
1,632,621	-				-0.7
1,632,621	-				-0.4
1,632,627	+				-0.1
1,632,696	+		Pf1N1B4_1424	0.18	-1.8
1,632,696	+		Pf1N1B4_1424	0.18	+0.5
1,632,696	+		Pf1N1B4_1424	0.18	-1.5
1,632,697	-		Pf1N1B4_1424	0.18	+1.1
1,632,697	-		Pf1N1B4_1424	0.18	-0.5
1,632,697	-		Pf1N1B4_1424	0.18	+0.0
1,632,697	-		Pf1N1B4_1424	0.18	-0.5
1,632,697	-		Pf1N1B4_1424	0.18	+1.9
1,632,866	-		Pf1N1B4_1424	0.53	+1.3
1,632,904	-		Pf1N1B4_1424	0.61	+0.3
1,632,911	+		Pf1N1B4_1424	0.62	+0.1
1,633,032	+		Pf1N1B4_1424	0.87	+0.6
1,633,032	+		Pf1N1B4_1424	0.87	-0.6
1,633,032	+		Pf1N1B4_1424	0.87	-0.1
1,633,033	-		Pf1N1B4_1424	0.87	-0.8
1,633,033	-		Pf1N1B4_1424	0.87	-0.9
1,633,135	+				-0.7
1,633,135	+				-1.7
1,633,136	-				-1.3
1,633,136	-				-0.6
1,633,159	+				-0.7
1,633,159	+				-1.1
1,633,160	-				+0.3
1,633,212	+				+0.4
1,633,318	+				+2.3
1,633,318	+				+0.1
1,633,318	+				-0.5
1,633,318	+				+0.3
1,633,319	-				+0.7
1,633,319	-				+0.3
1,633,319	-				-0.7
1,633,319	-				-0.9
1,633,319	-				-2.0
1,633,319	-				+0.3
1,633,319	-				-0.7
1,633,330	+				+1.3
1,633,366	+				-1.5
1,633,370	-				+0.3
1,633,553	+		Pf1N1B4_1425	0.24	+1.6
1,633,554	-		Pf1N1B4_1425	0.24	+0.3
1,633,569	+		Pf1N1B4_1425	0.26	-1.7
1,633,569	+		Pf1N1B4_1425	0.26	-1.9
1,633,569	+		Pf1N1B4_1425	0.26	-0.3
1,633,570	-		Pf1N1B4_1425	0.26	-0.9
1,633,570	-		Pf1N1B4_1425	0.26	-1.1
1,633,570	-		Pf1N1B4_1425	0.26	-1.0
1,633,570	-		Pf1N1B4_1425	0.26	-0.7