Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1333

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
1,527,757	+		Pf1N1B4_1332	0.39	-0.7
1,527,901	+		Pf1N1B4_1332	0.52	-0.9
1,527,902	-		Pf1N1B4_1332	0.52	-0.1
1,528,007	-		Pf1N1B4_1332	0.62	-0.5
1,528,007	-		Pf1N1B4_1332	0.62	-0.1
1,528,252	-		Pf1N1B4_1332	0.84	-1.1
1,528,497	+		Pf1N1B4_1333	0.10	+0.9
1,528,497	+		Pf1N1B4_1333	0.10	+0.4
1,528,497	+		Pf1N1B4_1333	0.10	+0.8
1,528,497	+		Pf1N1B4_1333	0.10	-1.9
1,528,497	+		Pf1N1B4_1333	0.10	+0.9
1,528,497	+		Pf1N1B4_1333	0.10	+0.9
1,528,497	+		Pf1N1B4_1333	0.10	-1.3
1,528,497	+		Pf1N1B4_1333	0.10	-1.3
1,528,497	+		Pf1N1B4_1333	0.10	-0.3
1,528,497	+		Pf1N1B4_1333	0.10	+1.3
1,528,497	+		Pf1N1B4_1333	0.10	+2.9
1,528,497	+		Pf1N1B4_1333	0.10	+0.6
1,528,497	+		Pf1N1B4_1333	0.10	-1.9
1,528,497	+		Pf1N1B4_1333	0.10	+1.8
1,528,497	+		Pf1N1B4_1333	0.10	+0.7
1,528,497	+				-0.7
1,528,498	-		Pf1N1B4_1333	0.10	+1.1
1,528,498	-		Pf1N1B4_1333	0.10	-0.3
1,528,498	-		Pf1N1B4_1333	0.10	-0.7
1,528,498	-		Pf1N1B4_1333	0.10	+0.4
1,528,498	-		Pf1N1B4_1333	0.10	+0.6
1,528,498	-		Pf1N1B4_1333	0.10	-0.3
1,529,139	+				-2.2
1,529,139	+				+0.1
1,529,139	+				-0.2
1,529,140	-				-0.7
1,529,140	-				+0.9
1,529,140	-				-0.4
1,529,154	+				-0.1
1,529,154	+				+0.0
1,529,154	+				-0.6
1,529,154	+				-0.3
1,529,154	+				-2.1
1,529,154	+				+1.3
1,529,155	-				+0.5
1,529,155	-				+0.5
1,529,155	-				-0.3
1,529,155	-				-1.1
1,529,158	+				-1.2
1,529,158	+				-0.3
1,529,159	-				-1.7
1,529,277	+				+0.1
1,529,278	-				-1.3
1,529,363	+				+0.9
1,529,363	+				+0.6
1,529,364	-				-0.7
1,529,364	-				-2.2
1,529,364	-				-1.1
1,529,364	-				-1.1
1,529,385	+				-1.1
1,529,385	+				+0.0
1,529,385	+				+0.9
1,529,385	+				-0.7
1,529,385	+				+1.6
1,529,385	+				-0.7
1,529,386	-				+0.4
1,529,386	-				+0.5
1,529,389	+				-2.1
1,529,390	-				-0.2
1,529,390	-				-0.8
1,529,390	-				-2.1
1,529,717	+		Pf1N1B4_1334	0.72	+0.5
1,529,717	+		Pf1N1B4_1334	0.72	+0.9
1,529,717	+		Pf1N1B4_1334	0.72	+1.3
1,529,718	-		Pf1N1B4_1334	0.72	-0.1
1,529,721	-		Pf1N1B4_1334	0.73	+0.4
1,529,774	-				+1.3
1,529,904	+				-1.9
1,529,905	-				-0.5
1,529,905	-				-0.9
1,529,942	+		Pf1N1B4_1335	0.14	+1.9
1,529,942	+		Pf1N1B4_1335	0.14	+1.0
1,529,942	+		Pf1N1B4_1335	0.14	-0.1
1,529,942	+		Pf1N1B4_1335	0.14	-1.4
1,529,942	+		Pf1N1B4_1335	0.14	-0.7
1,529,943	-		Pf1N1B4_1335	0.14	-0.8
1,529,943	-		Pf1N1B4_1335	0.14	-0.5
1,529,943	-		Pf1N1B4_1335	0.14	-0.7
1,530,017	+		Pf1N1B4_1335	0.29	-0.7
1,530,018	-		Pf1N1B4_1335	0.30	-1.3