Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_104

Experiment: 1-ethyl-3-methylimidazolium lysine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 5 mM
109,399	+		Pf1N1B4_103	0.64	-1.1
109,399	+		Pf1N1B4_103	0.64	-0.3
109,399	+		Pf1N1B4_103	0.64	-0.6
109,400	-		Pf1N1B4_103	0.64	-1.6
109,471	+		Pf1N1B4_103	0.70	+0.7
109,471	+				-0.9
109,471	+		Pf1N1B4_103	0.70	+0.7
109,472	-				+0.7
109,472	-		Pf1N1B4_103	0.70	-1.6
109,472	-		Pf1N1B4_103	0.70	-0.1
109,473	+		Pf1N1B4_103	0.70	-1.3
109,521	+		Pf1N1B4_103	0.73	-1.4
109,522	-		Pf1N1B4_103	0.73	-1.3
109,522	-		Pf1N1B4_103	0.73	+0.3
109,834	-				-0.6
109,861	-				-0.1
109,942	-				-0.1
109,942	-				-0.3
109,976	-				+0.1
109,976	-				-0.5
109,978	+				+0.3
110,134	+				-1.1
110,135	-				-0.6
110,135	-				+0.1
110,135	-				-0.9
110,238	-				-0.9
110,443	-				-0.7
110,715	-		Pf1N1B4_104	0.27	-1.1
111,065	-		Pf1N1B4_104	0.53	-2.1
111,249	+		Pf1N1B4_104	0.67	+0.4
111,250	-		Pf1N1B4_104	0.67	-1.3
111,251	+				-1.3
111,251	+		Pf1N1B4_104	0.67	-2.1
111,252	-				-1.6
111,252	-				+1.7
111,252	-		Pf1N1B4_104	0.68	-0.6
111,252	-		Pf1N1B4_104	0.68	-0.3
111,252	-				+1.7
111,435	+		Pf1N1B4_104	0.81	-0.3
111,436	-		Pf1N1B4_104	0.82	-1.9
111,436	-		Pf1N1B4_104	0.82	-1.3
111,436	-		Pf1N1B4_104	0.82	-0.7
111,441	-		Pf1N1B4_104	0.82	-2.3
111,441	-		Pf1N1B4_104	0.82	+1.3
111,996	+		Pf1N1B4_105	0.48	-0.6
112,232	-		Pf1N1B4_105	0.83	-2.3
112,364	+				+0.7
112,364	+				-1.4
112,368	+				-0.1
112,368	+				-0.3
112,368	+				-1.7
112,369	-				-2.3
112,395	+		Pf1N1B4_106	0.17	+0.4
112,409	+		Pf1N1B4_106	0.22	+1.0
112,438	+		Pf1N1B4_106	0.32	-0.0
112,438	+				+0.7
112,438	+		Pf1N1B4_106	0.32	+0.5
112,444	+		Pf1N1B4_106	0.34	-0.3
112,668	+				-0.7
112,668	+				-0.0
112,668	+				-0.3
112,668	+				-0.3
112,668	+				-1.9