Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04070 and MMP_RS04075 are separated by 1 nucleotides MMP_RS04075 and MMP_RS04080 are separated by 405 nucleotides MMP_RS04080 and MMP_RS04085 are separated by 287 nucleotides
MMP_RS04070: MMP_RS04070 - PEGA domain-containing protein, at 770,742 to 772,682
_RS04070
MMP_RS04075: MMP_RS04075 - hypothetical protein, at 772,684 to 773,019
_RS04075
MMP_RS04080: MMP_RS04080 - tRNA-Ser, at 773,425 to 773,511
_RS04080
MMP_RS04085: MMP_RS04085 - hypothetical protein, at 773,799 to 775,298
_RS04085
Position (kb) 772
773
774 Strain fitness (log2 ratio) -1
0
1 at 771.725 kb on - strand, within MMP_RS04070 at 771.725 kb on - strand, within MMP_RS04070 at 771.756 kb on - strand, within MMP_RS04070 at 771.798 kb on + strand, within MMP_RS04070 at 771.811 kb on + strand, within MMP_RS04070 at 771.863 kb on - strand, within MMP_RS04070 at 771.863 kb on - strand, within MMP_RS04070 at 771.863 kb on - strand, within MMP_RS04070 at 771.925 kb on - strand, within MMP_RS04070 at 771.963 kb on - strand, within MMP_RS04070 at 772.031 kb on - strand, within MMP_RS04070 at 772.042 kb on + strand, within MMP_RS04070 at 772.111 kb on - strand, within MMP_RS04070 at 772.117 kb on + strand, within MMP_RS04070 at 772.118 kb on - strand, within MMP_RS04070 at 772.127 kb on - strand, within MMP_RS04070 at 772.236 kb on - strand, within MMP_RS04070 at 772.237 kb on + strand, within MMP_RS04070 at 772.245 kb on + strand, within MMP_RS04070 at 772.264 kb on - strand, within MMP_RS04070 at 772.264 kb on - strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.265 kb on + strand, within MMP_RS04070 at 772.339 kb on + strand, within MMP_RS04070 at 772.341 kb on - strand, within MMP_RS04070 at 772.342 kb on + strand, within MMP_RS04070 at 772.373 kb on + strand, within MMP_RS04070 at 772.422 kb on - strand, within MMP_RS04070 at 772.423 kb on + strand, within MMP_RS04070 at 772.424 kb on - strand, within MMP_RS04070 at 772.462 kb on - strand, within MMP_RS04070 at 772.472 kb on - strand, within MMP_RS04070 at 772.539 kb on + strand at 773.208 kb on - strand at 773.251 kb on + strand at 773.386 kb on + strand at 773.630 kb on + strand at 773.633 kb on - strand at 773.633 kb on - strand at 773.635 kb on - strand at 773.636 kb on + strand at 773.636 kb on + strand at 773.716 kb on - strand at 773.717 kb on + strand at 773.717 kb on + strand at 773.744 kb on + strand at 773.759 kb on - strand at 773.759 kb on - strand at 773.762 kb on - strand at 773.769 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 5g/L bicarb, 40 psi H2CO2 remove 771,725 - MMP_RS04070 0.51 -0.3 771,725 - MMP_RS04070 0.51 -0.9 771,756 - MMP_RS04070 0.52 -0.6 771,798 + MMP_RS04070 0.54 +0.3 771,811 + MMP_RS04070 0.55 +0.5 771,863 - MMP_RS04070 0.58 -0.3 771,863 - MMP_RS04070 0.58 -0.3 771,863 - MMP_RS04070 0.58 +0.1 771,925 - MMP_RS04070 0.61 +0.4 771,963 - MMP_RS04070 0.63 +0.0 772,031 - MMP_RS04070 0.66 -0.3 772,042 + MMP_RS04070 0.67 -0.8 772,111 - MMP_RS04070 0.71 -0.4 772,117 + MMP_RS04070 0.71 -0.4 772,118 - MMP_RS04070 0.71 -1.1 772,127 - MMP_RS04070 0.71 -0.6 772,236 - MMP_RS04070 0.77 +0.6 772,237 + MMP_RS04070 0.77 -0.1 772,245 + MMP_RS04070 0.77 -0.2 772,264 - MMP_RS04070 0.78 -0.0 772,264 - MMP_RS04070 0.78 -0.5 772,265 + MMP_RS04070 0.78 +0.0 772,265 + MMP_RS04070 0.78 -0.0 772,265 + MMP_RS04070 0.78 +0.6 772,265 + MMP_RS04070 0.78 +0.3 772,265 + MMP_RS04070 0.78 +0.5 772,339 + MMP_RS04070 0.82 -1.3 772,341 - MMP_RS04070 0.82 -1.3 772,342 + MMP_RS04070 0.82 -0.8 772,373 + MMP_RS04070 0.84 -0.1 772,422 - MMP_RS04070 0.87 +0.1 772,423 + MMP_RS04070 0.87 -0.3 772,424 - MMP_RS04070 0.87 +0.3 772,462 - MMP_RS04070 0.89 -0.6 772,472 - MMP_RS04070 0.89 +0.3 772,539 + +0.4 773,208 - -0.2 773,251 + -0.6 773,386 + +0.4 773,630 + -0.4 773,633 - +0.0 773,633 - -0.0 773,635 - +0.2 773,636 + -0.8 773,636 + +0.4 773,716 - +0.1 773,717 + +0.6 773,717 + -0.2 773,744 + +0.1 773,759 - -0.2 773,759 - +0.1 773,762 - +0.8 773,769 - +0.2 773,778 - -1.1 773,778 - -0.4 773,778 - -0.1 773,839 + +0.5
Or see this region's nucleotide sequence