Experiment: H2 McCas, 5g/L bicarb, 40 psi H2CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03485 and MMP_RS03490 are separated by 43 nucleotides MMP_RS03490 and MMP_RS03495 are separated by 62 nucleotides MMP_RS03495 and MMP_RS03500 are separated by 368 nucleotides
MMP_RS03485: MMP_RS03485 - TIGR00267 family protein, at 653,984 to 654,544
_RS03485
MMP_RS03490: MMP_RS03490 - DUF2115 domain-containing protein, at 654,588 to 655,076
_RS03490
MMP_RS03495: MMP_RS03495 - Na/Pi cotransporter family protein, at 655,139 to 656,764
_RS03495
MMP_RS03500: MMP_RS03500 - 30S ribosomal protein S2, at 657,133 to 657,795
_RS03500
Position (kb) 655
656
657 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 654.164 kb on + strand, within MMP_RS03485 at 654.296 kb on - strand, within MMP_RS03485 at 654.296 kb on - strand, within MMP_RS03485 at 654.297 kb on + strand, within MMP_RS03485 at 654.340 kb on + strand, within MMP_RS03485 at 654.546 kb on - strand at 654.546 kb on - strand at 654.546 kb on - strand at 654.554 kb on + strand at 654.557 kb on - strand at 654.557 kb on - strand at 654.557 kb on - strand at 654.558 kb on + strand at 654.611 kb on - strand at 654.947 kb on - strand, within MMP_RS03490 at 655.089 kb on - strand at 655.094 kb on - strand at 655.140 kb on - strand at 655.234 kb on - strand at 655.395 kb on + strand, within MMP_RS03495 at 655.398 kb on + strand, within MMP_RS03495 at 655.482 kb on + strand, within MMP_RS03495 at 655.528 kb on - strand, within MMP_RS03495 at 655.532 kb on - strand, within MMP_RS03495 at 655.532 kb on - strand, within MMP_RS03495 at 655.533 kb on + strand, within MMP_RS03495 at 655.592 kb on - strand, within MMP_RS03495 at 655.810 kb on - strand, within MMP_RS03495 at 655.824 kb on - strand, within MMP_RS03495 at 655.824 kb on - strand, within MMP_RS03495 at 655.887 kb on + strand, within MMP_RS03495 at 655.906 kb on - strand, within MMP_RS03495 at 656.178 kb on + strand, within MMP_RS03495 at 656.268 kb on + strand, within MMP_RS03495 at 656.307 kb on + strand, within MMP_RS03495 at 656.340 kb on + strand, within MMP_RS03495 at 656.713 kb on + strand at 656.747 kb on - strand at 656.749 kb on - strand at 656.750 kb on + strand at 656.750 kb on + strand at 656.778 kb on + strand at 656.779 kb on - strand at 656.795 kb on - strand at 656.835 kb on - strand at 656.838 kb on - strand at 656.914 kb on - strand at 656.926 kb on - strand at 656.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 5g/L bicarb, 40 psi H2CO2 remove 654,164 + MMP_RS03485 0.32 -1.8 654,296 - MMP_RS03485 0.56 -3.4 654,296 - MMP_RS03485 0.56 -1.4 654,297 + MMP_RS03485 0.56 -2.1 654,340 + MMP_RS03485 0.63 -3.2 654,546 - -1.6 654,546 - -2.4 654,546 - -1.0 654,554 + -0.9 654,557 - -1.8 654,557 - -1.4 654,557 - -1.7 654,558 + +0.5 654,611 - -3.2 654,947 - MMP_RS03490 0.73 +0.4 655,089 - +0.2 655,094 - -0.1 655,140 - -1.4 655,234 - -0.5 655,395 + MMP_RS03495 0.16 -1.2 655,398 + MMP_RS03495 0.16 -2.6 655,482 + MMP_RS03495 0.21 -0.3 655,528 - MMP_RS03495 0.24 -2.8 655,532 - MMP_RS03495 0.24 -1.7 655,532 - MMP_RS03495 0.24 -2.0 655,533 + MMP_RS03495 0.24 -2.2 655,592 - MMP_RS03495 0.28 -0.6 655,810 - MMP_RS03495 0.41 -1.5 655,824 - MMP_RS03495 0.42 -0.1 655,824 - MMP_RS03495 0.42 -0.1 655,887 + MMP_RS03495 0.46 -3.2 655,906 - MMP_RS03495 0.47 -2.0 656,178 + MMP_RS03495 0.64 -1.5 656,268 + MMP_RS03495 0.69 -5.3 656,307 + MMP_RS03495 0.72 -3.8 656,340 + MMP_RS03495 0.74 -5.2 656,713 + -1.9 656,747 - -1.2 656,749 - -1.5 656,750 + -2.4 656,750 + -1.7 656,778 + -1.6 656,779 - -1.4 656,795 - -1.4 656,835 - -2.2 656,838 - -1.6 656,914 - -0.5 656,926 - -0.2 656,977 - -2.9
Or see this region's nucleotide sequence