Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03993

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,719,443	-				+0.2
3,719,451	-				-0.8
3,719,464	-		CCNA_03564	0.11	-1.6
3,719,488	+		CCNA_03564	0.21	+1.1
3,719,498	+		CCNA_03564	0.25	+2.3
3,719,498	+		CCNA_03564	0.25	-0.0
3,719,502	+		CCNA_03564	0.27	+1.1
3,719,503	+		CCNA_03564	0.27	+1.7
3,719,510	-		CCNA_03564	0.30	-1.1
3,719,510	-		CCNA_03564	0.30	-0.6
3,719,510	-		CCNA_03564	0.30	+1.3
3,719,512	+		CCNA_03564	0.31	-0.8
3,719,547	-		CCNA_03564	0.45	-1.0
3,719,552	-		CCNA_03564	0.47	+2.5
3,719,552	-		CCNA_03564	0.47	+2.1
3,719,624	+		CCNA_03564	0.78	+1.3
3,719,631	+		CCNA_03564	0.80	-0.5
3,719,631	+		CCNA_03564	0.80	-1.8
3,719,631	+		CCNA_03564	0.80	-0.5
3,719,639	-		CCNA_03564	0.84	+1.1
3,719,639	-		CCNA_03564	0.84	+0.3
3,719,666	+				-0.5
3,719,680	+				+2.0
3,719,737	+				+1.1
3,719,770	-				+0.9
3,719,771	-				+0.7
3,719,776	-				+0.8
3,719,800	+				+0.9
3,719,819	-				-0.3
3,719,819	-				+0.9
3,719,867	+		CCNA_03565	0.11	-1.1
3,719,867	+		CCNA_03565	0.11	-0.7
3,719,872	+		CCNA_03565	0.13	+1.7
3,719,875	-		CCNA_03565	0.14	-1.5
3,719,888	-		CCNA_03565	0.18	+0.4
3,719,927	-		CCNA_03565	0.30	+0.2
3,719,936	-		CCNA_03565	0.32	+0.0
3,719,941	+		CCNA_03565	0.34	-1.0
3,719,966	-		CCNA_03565	0.42	-0.7
3,719,975	+		CCNA_03565	0.44	-0.1
3,719,983	-		CCNA_03565	0.47	-0.5
3,720,008	+		CCNA_03565	0.55	+2.3
3,720,016	-		CCNA_03565	0.57	-0.7
3,720,016	-		CCNA_03565	0.57	-0.5
3,720,033	+		CCNA_03565	0.62	-0.9
3,720,033	+		CCNA_03565	0.62	+1.9
3,720,033	+		CCNA_03565	0.62	-1.5
3,720,033	+		CCNA_03565	0.62	-0.9
3,720,033	+		CCNA_03565	0.62	-0.5
3,720,041	-		CCNA_03565	0.65	+0.9
3,720,042	-		CCNA_03565	0.65	-0.2
3,720,042	-		CCNA_03565	0.65	-0.1
3,720,057	-		CCNA_03565	0.70	+3.4
3,720,062	-		CCNA_03565	0.71	+1.1
3,720,117	-		CCNA_03565	0.88	+0.3
3,720,121	+		CCNA_03565	0.90	-0.5
3,720,188	-				+1.8
3,720,198	-				+1.4
3,720,227	+				-0.1
3,720,377	+				-0.6
3,720,378	+				-1.8
3,720,398	+				-1.8
3,720,412	+				-0.6
3,720,413	-				-1.4
3,720,434	+				-0.0
3,720,442	-		CCNA_03993	0.10	-1.2
3,720,442	-		CCNA_03993	0.10	+0.0
3,720,454	+		CCNA_03993	0.13	+1.4
3,720,454	+		CCNA_03993	0.13	-1.5
3,720,462	-		CCNA_03993	0.15	-0.9
3,720,462	-		CCNA_03993	0.15	+1.0
3,720,467	+		CCNA_03993	0.16	-1.6
3,720,469	-		CCNA_03993	0.17	-0.2
3,720,516	+		CCNA_03993	0.28	-0.6
3,720,565	+		CCNA_03993	0.40	-0.5
3,720,565	+		CCNA_03993	0.40	-0.8
3,720,568	-		CCNA_03993	0.40	-0.4
3,720,568	-		CCNA_03993	0.40	+2.3
3,720,582	-		CCNA_03993	0.44	-0.2
3,720,597	-		CCNA_03993	0.47	-0.2
3,720,597	-		CCNA_03993	0.47	+0.5
3,720,597	-		CCNA_03993	0.47	+0.1
3,720,616	-		CCNA_03993	0.52	+1.8
3,720,616	-		CCNA_03993	0.52	-0.7
3,720,622	+		CCNA_03993	0.53	-1.2
3,720,622	+		CCNA_03993	0.53	-1.6
3,720,622	+		CCNA_03993	0.53	-0.1
3,720,622	+		CCNA_03993	0.53	-0.1
3,720,630	-		CCNA_03993	0.55	+0.6
3,720,630	-		CCNA_03993	0.55	+0.6
3,720,630	-		CCNA_03993	0.55	+1.2
3,720,630	-		CCNA_03993	0.55	+0.1
3,720,630	-		CCNA_03993	0.55	-0.3
3,720,750	-		CCNA_03993	0.84	+1.4
3,720,833	+				-0.5
3,720,833	+				-0.5
3,720,833	+				-0.9
3,720,838	+				+0.7
3,720,841	-				+0.9
3,720,841	-				-0.5
3,720,841	-				+3.8
3,720,841	-				+1.4
3,720,841	-				+0.5
3,720,841	-				+0.8
3,720,846	-				+3.7
3,720,868	-				-1.0
3,720,933	-				+0.0
3,720,948	+				+0.5
3,720,962	-				-0.2
3,720,988	-				-1.3
3,720,999	-				+0.0
3,720,999	-				-1.2
3,721,048	-				+0.5
3,721,058	+				-0.6
3,721,071	-				-1.6
3,721,071	-				+0.8
3,721,085	+		CCNA_03567	0.10	-0.2
3,721,093	-		CCNA_03567	0.11	+0.4
3,721,103	-		CCNA_03567	0.12	-1.1
3,721,134	-		CCNA_03567	0.14	-0.7
3,721,147	-		CCNA_03567	0.15	-0.5
3,721,183	+		CCNA_03567	0.18	+1.5
3,721,193	+		CCNA_03567	0.19	-0.3
3,721,193	+		CCNA_03567	0.19	+0.7
3,721,201	-		CCNA_03567	0.19	-2.1
3,721,201	-		CCNA_03567	0.19	+0.8
3,721,201	-		CCNA_03567	0.19	+0.9
3,721,201	-		CCNA_03567	0.19	+0.5
3,721,201	-		CCNA_03567	0.19	+1.0
3,721,201	-		CCNA_03567	0.19	-0.7
3,721,201	-		CCNA_03567	0.19	+1.7
3,721,207	-		CCNA_03567	0.20	+0.8
3,721,209	+		CCNA_03567	0.20	+0.9
3,721,219	+		CCNA_03567	0.20	-1.9
3,721,236	+		CCNA_03567	0.22	-0.6
3,721,241	+		CCNA_03567	0.22	+0.6
3,721,266	+		CCNA_03567	0.24	-1.4
3,721,267	+		CCNA_03567	0.24	-0.5
3,721,267	+		CCNA_03567	0.24	-1.0
3,721,274	-		CCNA_03567	0.25	+0.1
3,721,275	-		CCNA_03567	0.25	-1.3
3,721,275	-		CCNA_03567	0.25	-0.2
3,721,275	-		CCNA_03567	0.25	+0.1
3,721,277	+		CCNA_03567	0.25	-1.0
3,721,277	+		CCNA_03567	0.25	+0.3
3,721,408	+		CCNA_03567	0.35	+0.5
3,721,408	+		CCNA_03567	0.35	-1.5
3,721,408	+		CCNA_03567	0.35	-0.8
3,721,408	+				+1.5
3,721,416	-		CCNA_03567	0.36	-0.9
3,721,416	-		CCNA_03567	0.36	+0.3
3,721,418	+		CCNA_03567	0.36	-1.3
3,721,426	-		CCNA_03567	0.36	+0.7
3,721,431	-		CCNA_03567	0.37	-1.3
3,721,433	-		CCNA_03567	0.37	+0.0
3,721,435	+		CCNA_03567	0.37	-0.4
3,721,451	+		CCNA_03567	0.38	-0.2
3,721,457	+		CCNA_03567	0.39	+0.0
3,721,459	-		CCNA_03567	0.39	-0.4
3,721,488	-		CCNA_03567	0.41	-0.9
3,721,512	+		CCNA_03567	0.43	+0.7
3,721,518	-		CCNA_03567	0.43	-0.6
3,721,525	-		CCNA_03567	0.44	-1.3
3,721,525	-		CCNA_03567	0.44	+1.8
3,721,550	-		CCNA_03567	0.46	-2.0
3,721,550	-		CCNA_03567	0.46	-0.6
3,721,576	-		CCNA_03567	0.48	+1.8
3,721,595	+		CCNA_03567	0.49	-1.4
3,721,603	+		CCNA_03567	0.50	-0.2
3,721,605	-		CCNA_03567	0.50	-0.6
3,721,610	-		CCNA_03567	0.50	-1.9
3,721,614	+		CCNA_03567	0.51	-0.9
3,721,614	+		CCNA_03567	0.51	-1.3
3,721,622	-		CCNA_03567	0.51	-1.2
3,721,652	+		CCNA_03567	0.54	+0.4
3,721,660	-		CCNA_03567	0.54	-0.5
3,721,661	-		CCNA_03567	0.54	-0.9
3,721,741	+		CCNA_03567	0.60	-1.2
3,721,749	-		CCNA_03567	0.61	-0.9
3,721,753	+		CCNA_03567	0.61	-0.2
3,721,758	+		CCNA_03567	0.62	+0.3
3,721,758	+		CCNA_03567	0.62	+0.3
3,721,758	+		CCNA_03567	0.62	-0.2
3,721,761	-		CCNA_03567	0.62	-0.8
3,721,773	+		CCNA_03567	0.63	-0.3