Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03959
Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | PYE with nitrite 5 mM |
---|---|---|---|---|---|
remove | |||||
2,096,420 | - | CCNA_01952 | 0.54 | +1.5 | |
2,096,923 | + | -0.0 | |||
2,096,923 | + | +1.6 | |||
2,096,923 | + | -1.3 | |||
2,096,923 | + | -0.0 | |||
2,096,931 | - | +2.0 | |||
2,096,931 | - | +0.1 | |||
2,096,931 | - | -0.7 | |||
2,096,931 | - | +0.2 | |||
2,096,931 | - | +0.3 | |||
2,096,931 | - | +0.5 | |||
2,096,931 | - | +1.5 | |||
2,096,931 | - | +2.2 | |||
2,096,931 | - | +0.7 | |||
2,096,931 | - | -0.6 | |||
2,096,942 | - | +0.8 | |||
2,096,942 | - | -1.1 | |||
2,096,952 | + | +1.3 | |||
2,096,965 | - | -1.1 | |||
2,096,967 | - | +0.2 | |||
2,097,012 | - | +2.0 | |||
2,097,042 | - | +1.6 | |||
2,097,097 | - | +1.5 | |||
2,097,117 | + | +1.1 | |||
2,097,125 | - | +0.1 | |||
2,097,128 | + | +3.3 | |||
2,097,186 | + | +1.5 | |||
2,097,221 | + | -0.5 | |||
2,097,322 | + | +2.3 | |||
2,097,368 | + | +2.8 | |||
2,097,420 | + | CCNA_03959 | 0.37 | +2.6 | |
2,097,451 | - | CCNA_03959 | 0.52 | -0.5 |
Or see this region's nucleotide sequence