Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03902

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,124,256	+		CCNA_02967	0.61	+0.4
3,124,287	-		CCNA_02967	0.63	+1.0
3,124,302	-		CCNA_02967	0.63	-0.2
3,124,342	-		CCNA_02967	0.65	-1.0
3,124,351	+		CCNA_02967	0.65	+2.4
3,124,357	+		CCNA_02967	0.66	-0.2
3,124,358	+		CCNA_02967	0.66	-0.2
3,124,367	-		CCNA_02967	0.66	+0.1
3,124,373	-		CCNA_02967	0.66	-1.5
3,124,415	+		CCNA_02967	0.68	+0.1
3,124,420	+		CCNA_02967	0.68	-1.0
3,124,428	-		CCNA_02967	0.69	+0.6
3,124,542	+		CCNA_02967	0.73	-1.2
3,124,556	-		CCNA_02967	0.74	+0.3
3,124,567	-		CCNA_02967	0.74	-0.5
3,124,569	+		CCNA_02967	0.75	+0.5
3,124,580	+		CCNA_02967	0.75	-1.5
3,124,618	+		CCNA_02967	0.77	+0.8
3,124,653	+		CCNA_02967	0.78	+1.2
3,124,653	+		CCNA_02967	0.78	-0.6
3,124,653	+		CCNA_02967	0.78	+1.1
3,124,661	-		CCNA_02967	0.78	+0.2
3,124,661	-		CCNA_02967	0.78	+0.3
3,124,661	-		CCNA_02967	0.78	-0.5
3,124,669	+		CCNA_02967	0.79	-1.5
3,124,670	+		CCNA_02967	0.79	+1.3
3,124,685	+		CCNA_02967	0.79	+0.1
3,124,698	+		CCNA_02967	0.80	+1.3
3,124,706	-		CCNA_02967	0.80	-1.0
3,124,737	+		CCNA_02967	0.82	-0.2
3,124,799	+		CCNA_02967	0.84	+0.6
3,124,837	+		CCNA_02967	0.86	-1.1
3,124,872	+		CCNA_02967	0.87	-0.7
3,124,877	+		CCNA_02967	0.87	-0.3
3,124,887	+		CCNA_02967	0.88	+0.3
3,124,931	+		CCNA_02967	0.90	+1.0
3,124,951	-				+1.2
3,124,967	+				-1.3
3,124,967	+				+1.4
3,124,970	-				-1.0
3,125,004	+				-1.2
3,125,004	+				-0.5
3,125,012	-				+0.5
3,125,051	+				-0.0
3,125,067	-				+0.2
3,125,074	-				+0.1
3,125,081	+				-0.0
3,125,081	+				+1.2
3,125,083	-				+0.2
3,125,089	-				-0.1
3,125,150	-				-0.6
3,125,153	+				-0.8
3,125,171	-				+0.0
3,125,195	-				+0.0
3,125,244	-				+0.1
3,125,326	+		CCNA_03902	0.26	-0.3
3,125,328	+		CCNA_03902	0.27	-0.0
3,125,334	-		CCNA_03902	0.29	-1.6
3,125,334	-		CCNA_03902	0.29	-0.5
3,125,351	+		CCNA_03902	0.34	-2.0
3,125,351	+		CCNA_03902	0.34	-1.1
3,125,351	+		CCNA_03902	0.34	+0.7
3,125,351	+		CCNA_03902	0.34	+1.4
3,125,352	+				+2.0
3,125,359	-		CCNA_03902	0.36	-2.0
3,125,397	+		CCNA_03902	0.47	+1.8
3,125,408	+		CCNA_03902	0.51	-0.9
3,125,433	+		CCNA_03902	0.58	+1.8
3,125,448	+		CCNA_03902	0.62	-0.4
3,125,451	-		CCNA_03902	0.63	-1.1
3,125,451	-		CCNA_03902	0.63	-1.0
3,125,521	-		CCNA_03902	0.84	+0.8
3,125,523	+		CCNA_03902	0.85	-0.3
3,125,524	-		CCNA_03902	0.85	-0.9
3,125,539	+		CCNA_03902	0.90	-1.7
3,125,544	+				+0.1
3,125,558	+				+0.7
3,125,607	+				+0.2
3,125,648	+		CCNA_03883	0.19	-0.5
3,125,668	-		CCNA_03883	0.24	-0.3
3,125,668	-		CCNA_03883	0.24	+1.3
3,125,760	+		CCNA_03883	0.46	-0.7
3,125,775	+		CCNA_03883	0.49	+0.5
3,125,823	-		CCNA_03883	0.61	+0.0
3,125,845	+		CCNA_03883	0.66	-0.4
3,125,848	-		CCNA_03883	0.67	+2.0
3,125,853	-		CCNA_03883	0.68	+1.0
3,125,853	-		CCNA_03883	0.68	+1.4
3,125,880	+		CCNA_03883	0.74	-0.0
3,125,893	+		CCNA_03883	0.77	-0.7
3,125,898	+		CCNA_03883	0.79	+0.1
3,125,906	-		CCNA_03883	0.81	-1.2
3,125,939	+		CCNA_03883	0.88	+2.5
3,125,939	+		CCNA_03883	0.88	-0.8
3,125,939	+		CCNA_03883	0.88	+1.2
3,125,939	+		CCNA_03883	0.88	+0.9
3,125,939	+		CCNA_03883	0.88	+0.1
3,125,939	+		CCNA_03883	0.88	-1.3
3,125,939	+		CCNA_03883	0.88	+2.8
3,125,939	+		CCNA_03883	0.88	-0.7
3,125,939	+		CCNA_03883	0.88	+0.3
3,125,947	-				+0.1
3,125,947	-				-0.9
3,125,947	-				+0.6
3,125,947	-				+1.5
3,125,947	-				-2.4
3,126,052	+				+0.8
3,126,100	+				+1.4
3,126,121	+		CCNA_02969	0.12	+0.6
3,126,129	-		CCNA_02969	0.13	+0.1
3,126,186	+		CCNA_02969	0.24	-1.4
3,126,204	+		CCNA_02969	0.27	+1.1
3,126,211	+		CCNA_02969	0.28	+2.5
3,126,211	+		CCNA_02969	0.28	+2.0
3,126,216	+		CCNA_02969	0.29	-0.5
3,126,226	+		CCNA_02969	0.31	+2.3
3,126,258	+		CCNA_02969	0.37	+2.6
3,126,301	+		CCNA_02969	0.44	+1.7
3,126,309	+		CCNA_02969	0.46	+1.9
3,126,323	-		CCNA_02969	0.48	-1.3
3,126,397	+		CCNA_02969	0.62	+1.1
3,126,430	+		CCNA_02969	0.68	+1.6
3,126,449	+		CCNA_02969	0.71	+1.7
3,126,502	+		CCNA_02969	0.81	+0.8
3,126,509	+		CCNA_02969	0.82	+1.8
3,126,509	+		CCNA_02969	0.82	+1.1
3,126,509	+		CCNA_02969	0.82	+1.6
3,126,509	+		CCNA_02969	0.82	+2.0
3,126,527	+		CCNA_02969	0.85	+1.6
3,126,536	+		CCNA_02969	0.87	+1.3
3,126,537	+		CCNA_02969	0.87	+1.5