Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03896

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02078 and CCNA_03896 are separated by 366 nucleotidesCCNA_03896 and CCNA_02080 are separated by 216 nucleotides CCNA_02078: CCNA_02078 - seryl-tRNA synthetase, at 2,228,427 to 2,229,875 _02078 CCNA_03896: CCNA_03896 - hypothetical protein, at 2,230,242 to 2,230,709 _03896 CCNA_02080: CCNA_02080 - Sec-independent protein translocase protein tatC, at 2,230,926 to 2,231,828 _02080 Position (kb) 2230 2231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2230.116 kb on - strandat 2230.116 kb on - strandat 2230.116 kb on - strandat 2230.147 kb on - strandat 2230.184 kb on - strandat 2230.224 kb on + strandat 2230.232 kb on - strandat 2230.241 kb on - strandat 2230.280 kb on - strandat 2230.316 kb on + strand, within CCNA_03896at 2230.318 kb on - strand, within CCNA_03896at 2230.349 kb on + strand, within CCNA_03896at 2230.351 kb on + strand, within CCNA_03896at 2230.357 kb on - strand, within CCNA_03896at 2230.382 kb on - strand, within CCNA_03896at 2230.394 kb on + strand, within CCNA_03896at 2230.415 kb on + strand, within CCNA_03896at 2230.422 kb on + strand, within CCNA_03896at 2230.422 kb on + strand, within CCNA_03896at 2230.422 kb on + strand, within CCNA_03896at 2230.422 kb on + strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.430 kb on - strand, within CCNA_03896at 2230.456 kb on - strand, within CCNA_03896at 2230.511 kb on + strand, within CCNA_03896at 2230.511 kb on + strand, within CCNA_03896at 2230.511 kb on - strand, within CCNA_03896at 2230.522 kb on + strand, within CCNA_03896at 2230.547 kb on + strand, within CCNA_03896at 2230.565 kb on + strand, within CCNA_03896at 2230.573 kb on - strand, within CCNA_03896at 2230.674 kb on + strandat 2230.676 kb on - strandat 2230.680 kb on + strandat 2230.688 kb on - strandat 2230.688 kb on - strandat 2230.699 kb on - strandat 2230.715 kb on + strandat 2230.796 kb on - strandat 2230.844 kb on + strandat 2230.849 kb on + strandat 2230.852 kb on - strandat 2230.908 kb on - strandat 2230.940 kb on + strandat 2230.940 kb on + strandat 2230.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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2,230,116 - +1.3
2,230,116 - -0.2
2,230,116 - -1.2
2,230,147 - -1.5
2,230,184 - -1.4
2,230,224 + +1.6
2,230,232 - -0.0
2,230,241 - +0.5
2,230,280 - -0.5
2,230,316 + CCNA_03896 0.16 +0.3
2,230,318 - CCNA_03896 0.16 +1.3
2,230,349 + CCNA_03896 0.23 +2.4
2,230,351 + CCNA_03896 0.23 +1.8
2,230,357 - CCNA_03896 0.25 +0.1
2,230,382 - CCNA_03896 0.30 -0.7
2,230,394 + CCNA_03896 0.32 +1.5
2,230,415 + CCNA_03896 0.37 +2.4
2,230,422 + CCNA_03896 0.38 +1.1
2,230,422 + CCNA_03896 0.38 +3.2
2,230,422 + CCNA_03896 0.38 +3.0
2,230,422 + CCNA_03896 0.38 +1.8
2,230,430 - CCNA_03896 0.40 -1.6
2,230,430 - CCNA_03896 0.40 -1.1
2,230,430 - CCNA_03896 0.40 -1.6
2,230,430 - CCNA_03896 0.40 -0.3
2,230,430 - CCNA_03896 0.40 -1.4
2,230,430 - CCNA_03896 0.40 +1.4
2,230,430 - CCNA_03896 0.40 -1.5
2,230,430 - CCNA_03896 0.40 -0.2
2,230,456 - CCNA_03896 0.46 +0.5
2,230,511 + CCNA_03896 0.57 +2.6
2,230,511 + CCNA_03896 0.57 +2.5
2,230,511 - CCNA_03896 0.57 +0.1
2,230,522 + CCNA_03896 0.60 +2.7
2,230,547 + CCNA_03896 0.65 +2.9
2,230,565 + CCNA_03896 0.69 +3.4
2,230,573 - CCNA_03896 0.71 -0.9
2,230,674 + +3.4
2,230,676 - -1.5
2,230,680 + +3.6
2,230,688 - -2.3
2,230,688 - -0.5
2,230,699 - +0.1
2,230,715 + +3.6
2,230,796 - +0.6
2,230,844 + -0.4
2,230,849 + -0.1
2,230,852 - +1.1
2,230,908 - +2.1
2,230,940 + -0.3
2,230,940 + +0.0
2,230,948 - +2.3

Or see this region's nucleotide sequence