Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03811

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,973,786	-		CCNA_03809	0.72	-0.5
3,973,824	+		CCNA_03809	0.77	+1.1
3,973,834	+		CCNA_03809	0.78	+1.3
3,973,834	+		CCNA_03809	0.78	+1.6
3,973,834	+		CCNA_03809	0.78	+2.0
3,973,857	-		CCNA_03809	0.81	+0.8
3,973,945	+				+1.6
3,973,960	+				+2.0
3,973,987	-				+1.3
3,974,053	-				-2.0
3,974,055	+				+4.2
3,974,055	-				-1.5
3,974,071	+				+2.2
3,974,134	+		CCNA_03810	0.16	+2.5
3,974,134	+		CCNA_03810	0.16	+1.4
3,974,134	+		CCNA_03810	0.16	+2.5
3,974,137	-		CCNA_03810	0.17	+1.2
3,974,139	+		CCNA_03810	0.17	+1.9
3,974,154	+		CCNA_03810	0.19	+2.5
3,974,165	+		CCNA_03810	0.20	+2.2
3,974,167	-		CCNA_03810	0.21	-0.3
3,974,237	-				+1.5
3,974,237	-				+2.8
3,974,237	-		CCNA_03810	0.30	-1.1
3,974,237	-		CCNA_03810	0.30	-0.1
3,974,237	-		CCNA_03810	0.30	+0.6
3,974,274	+		CCNA_03810	0.35	+2.4
3,974,282	-		CCNA_03810	0.36	-0.6
3,974,282	-		CCNA_03810	0.36	-0.8
3,974,295	-		CCNA_03810	0.37	+1.1
3,974,332	-		CCNA_03810	0.42	-0.1
3,974,365	+		CCNA_03810	0.46	+1.8
3,974,373	-		CCNA_03810	0.47	-0.1
3,974,450	+		CCNA_03810	0.57	+2.2
3,974,458	-		CCNA_03810	0.58	-0.4
3,974,458	-		CCNA_03810	0.58	-0.2
3,974,460	-		CCNA_03810	0.59	-0.2
3,974,467	+		CCNA_03810	0.60	+1.5
3,974,467	+		CCNA_03810	0.60	+2.0
3,974,467	+		CCNA_03810	0.60	+2.2
3,974,467	+		CCNA_03810	0.60	+2.2
3,974,467	+		CCNA_03810	0.60	+2.5
3,974,467	+		CCNA_03810	0.60	+2.6
3,974,467	+		CCNA_03810	0.60	+2.2
3,974,475	-		CCNA_03810	0.61	+1.8
3,974,475	-		CCNA_03810	0.61	+1.8
3,974,475	-		CCNA_03810	0.61	-1.6
3,974,482	+		CCNA_03810	0.61	+2.4
3,974,482	+		CCNA_03810	0.61	+1.3
3,974,482	+		CCNA_03810	0.61	+2.3
3,974,482	+		CCNA_03810	0.61	+2.0
3,974,490	-		CCNA_03810	0.63	-0.3
3,974,525	-		CCNA_03810	0.67	+0.9
3,974,538	+		CCNA_03810	0.69	+2.4
3,974,612	+		CCNA_03810	0.78	+2.3
3,974,612	+		CCNA_03810	0.78	+1.7
3,974,612	+		CCNA_03810	0.78	+2.7
3,974,620	-		CCNA_03810	0.79	+1.3
3,974,620	-		CCNA_03810	0.79	-0.5
3,974,620	-		CCNA_03810	0.79	+0.3
3,974,620	-		CCNA_03810	0.79	-1.0
3,974,620	-		CCNA_03810	0.79	+0.5
3,974,637	-		CCNA_03810	0.82	+0.9
3,974,703	+				+1.5
3,974,733	-				+0.2
3,974,779	+				+0.4
3,974,857	-				+2.9
3,974,962	+		CCNA_03811	0.20	-1.3
3,974,962	+		CCNA_03811	0.20	+0.2
3,974,967	+		CCNA_03811	0.20	+1.8
3,974,967	+		CCNA_03811	0.20	+0.9
3,974,967	+		CCNA_03811	0.20	+1.7
3,974,967	+		CCNA_03811	0.20	+0.8
3,974,967	+		CCNA_03811	0.20	+1.5
3,974,967	+		CCNA_03811	0.20	+0.5
3,974,967	+		CCNA_03811	0.20	+2.0
3,974,970	-		CCNA_03811	0.20	+2.5
3,974,975	-		CCNA_03811	0.21	+2.5
3,974,975	-		CCNA_03811	0.21	+2.6
3,974,975	-		CCNA_03811	0.21	+2.6
3,974,990	+		CCNA_03811	0.23	+2.8
3,974,993	-		CCNA_03811	0.23	+2.7
3,975,024	-		CCNA_03811	0.26	+1.9
3,975,035	-		CCNA_03811	0.28	+2.1
3,975,035	-		CCNA_03811	0.28	+2.9
3,975,066	+		CCNA_03811	0.31	+1.2
3,975,074	-		CCNA_03811	0.32	+2.9
3,975,144	-		CCNA_03811	0.40	+2.2
3,975,176	+		CCNA_03811	0.43	+1.5
3,975,210	+		CCNA_03811	0.47	+0.0
3,975,214	-		CCNA_03811	0.48	+2.1
3,975,219	-		CCNA_03811	0.48	+2.7
3,975,235	-		CCNA_03811	0.50	+2.0
3,975,235	-		CCNA_03811	0.50	+2.8
3,975,275	+		CCNA_03811	0.54	-0.2
3,975,300	-		CCNA_03811	0.57	+1.9
3,975,300	-		CCNA_03811	0.57	+3.7
3,975,358	+		CCNA_03811	0.63	+0.6
3,975,358	+		CCNA_03811	0.63	-0.5
3,975,366	-		CCNA_03811	0.64	+3.0
3,975,366	-		CCNA_03811	0.64	+1.6
3,975,420	+		CCNA_03811	0.70	-1.1
3,975,428	-		CCNA_03811	0.71	+2.2
3,975,437	+		CCNA_03811	0.72	-0.4
3,975,450	+		CCNA_03811	0.74	+2.2
3,975,464	+		CCNA_03811	0.75	+0.8
3,975,464	+		CCNA_03811	0.75	+1.2
3,975,464	+		CCNA_03811	0.75	+0.7
3,975,474	-		CCNA_03811	0.76	+1.9
3,975,567	+		CCNA_03811	0.87	+1.2
3,975,585	+		CCNA_03811	0.89	-0.2
3,975,638	+				+0.8
3,975,643	-				+1.5
3,975,740	-				-0.1
3,975,744	+				+0.7
3,975,744	+				+0.5
3,975,744	+				+1.0
3,975,790	+				+0.3
3,975,802	+				+0.2
3,975,841	-				+1.7
3,975,879	-				+0.2
3,975,879	-				-0.2
3,975,904	-				-0.3
3,975,937	+				-0.3
3,976,000	+		CCNA_03812	0.16	-0.1
3,976,013	+		CCNA_03812	0.18	+1.6
3,976,013	+		CCNA_03812	0.18	-0.8
3,976,092	+		CCNA_03812	0.33	-0.6
3,976,100	-		CCNA_03812	0.34	-1.2
3,976,105	-		CCNA_03812	0.35	-0.8
3,976,183	+		CCNA_03812	0.49	-0.5
3,976,183	+		CCNA_03812	0.49	+0.7
3,976,205	+		CCNA_03812	0.53	+0.5
3,976,205	+		CCNA_03812	0.53	-0.7
3,976,205	+		CCNA_03812	0.53	-1.0
3,976,213	-		CCNA_03812	0.55	+0.4
3,976,213	-		CCNA_03812	0.55	-1.1
3,976,213	-		CCNA_03812	0.55	+0.6
3,976,263	+		CCNA_03812	0.64	-2.3
3,976,263	+		CCNA_03812	0.64	+1.1
3,976,263	+		CCNA_03812	0.64	-0.6
3,976,263	+				+2.2
3,976,263	+		CCNA_03812	0.64	-1.2
3,976,268	+		CCNA_03812	0.65	-2.3
3,976,271	-		CCNA_03812	0.65	-0.6
3,976,271	-		CCNA_03812	0.65	-0.7
3,976,271	-		CCNA_03812	0.65	-1.3
3,976,271	-		CCNA_03812	0.65	-0.6
3,976,271	-		CCNA_03812	0.65	+0.5
3,976,271	-		CCNA_03812	0.65	-0.3
3,976,271	-		CCNA_03812	0.65	-2.2
3,976,271	-		CCNA_03812	0.65	-1.2
3,976,337	-		CCNA_03812	0.77	-1.5
3,976,362	+		CCNA_03812	0.82	+0.4
3,976,376	+		CCNA_03812	0.84	-0.9
3,976,393	+		CCNA_03812	0.87	+1.8
3,976,416	-				-2.6
3,976,435	+				-2.4
3,976,456	+				-1.7
3,976,464	-				-0.5
3,976,464	-				-0.8
3,976,464	-				-0.3
3,976,469	-				+2.2
3,976,474	-				-0.9
3,976,509	-				-0.2
3,976,566	-				+0.5
3,976,598	+				+0.3
3,976,599	+				+0.8
3,976,603	+				+2.0
3,976,606	-				+0.0
3,976,606	-				-0.5
3,976,613	+				+1.6
3,976,679	-				+0.9