Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03802

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,965,475	-		CCNA_03801	0.56	+1.4
3,965,475	-		CCNA_03801	0.56	-1.1
3,965,475	-		CCNA_03801	0.56	+0.0
3,965,493	-		CCNA_03801	0.57	+3.9
3,965,495	+		CCNA_03801	0.57	+0.4
3,965,495	+		CCNA_03801	0.57	+1.1
3,965,496	+		CCNA_03801	0.57	-1.8
3,965,503	-		CCNA_03801	0.57	-0.6
3,965,529	+		CCNA_03801	0.58	-0.3
3,965,538	-		CCNA_03801	0.59	+1.2
3,965,538	-		CCNA_03801	0.59	+1.2
3,965,570	+		CCNA_03801	0.60	+3.5
3,965,570	+		CCNA_03801	0.60	+2.7
3,965,580	+		CCNA_03801	0.61	-2.0
3,965,580	+		CCNA_03801	0.61	-0.9
3,965,605	+		CCNA_03801	0.62	-2.6
3,965,613	-		CCNA_03801	0.62	+0.4
3,965,651	+		CCNA_03801	0.64	-1.3
3,965,674	-		CCNA_03801	0.65	+2.2
3,965,681	+		CCNA_03801	0.65	-3.2
3,965,691	+		CCNA_03801	0.66	+0.6
3,965,700	+		CCNA_03801	0.66	-1.8
3,965,707	+		CCNA_03801	0.66	-1.5
3,965,738	+		CCNA_03801	0.68	-0.3
3,965,754	+		CCNA_03801	0.68	-0.3
3,965,755	-		CCNA_03801	0.68	-0.1
3,965,786	+		CCNA_03801	0.70	+0.6
3,965,794	+		CCNA_03801	0.70	-0.1
3,965,803	+		CCNA_03801	0.70	-0.1
3,965,811	-		CCNA_03801	0.71	+0.0
3,965,820	-		CCNA_03801	0.71	+0.4
3,965,849	+		CCNA_03801	0.73	+0.2
3,965,849	+		CCNA_03801	0.73	-0.8
3,965,849	+		CCNA_03801	0.73	-1.3
3,965,849	+		CCNA_03801	0.73	+2.4
3,965,857	-		CCNA_03801	0.73	-0.6
3,965,857	-		CCNA_03801	0.73	-1.9
3,965,870	+		CCNA_03801	0.73	+1.0
3,965,880	-		CCNA_03801	0.74	+0.4
3,965,880	-		CCNA_03801	0.74	-1.9
3,965,880	-		CCNA_03801	0.74	-1.0
3,965,913	-		CCNA_03801	0.75	-0.7
3,965,916	+		CCNA_03801	0.75	+3.8
3,965,916	+		CCNA_03801	0.75	-2.9
3,965,916	+		CCNA_03801	0.75	+0.4
3,965,921	+		CCNA_03801	0.76	+0.8
3,965,938	+		CCNA_03801	0.76	-0.3
3,965,966	+		CCNA_03801	0.78	+1.0
3,966,027	-		CCNA_03801	0.80	+1.0
3,966,051	+		CCNA_03801	0.81	+0.0
3,966,051	+		CCNA_03801	0.81	-0.5
3,966,053	+		CCNA_03801	0.82	+0.4
3,966,079	+		CCNA_03801	0.83	-1.3
3,966,203	+		CCNA_03801	0.88	+0.8
3,966,215	+		CCNA_03801	0.89	+0.2
3,966,244	-				-0.3
3,966,263	+				+0.8
3,966,263	+				-1.2
3,966,263	+				-1.2
3,966,271	-				-1.0
3,966,276	+				-1.7
3,966,304	-				-0.0
3,966,348	-				+2.0
3,966,356	+				+0.9
3,966,371	+				-0.4
3,966,400	+				+0.4
3,966,426	+				-0.6
3,966,426	+				-0.8
3,966,426	+				+2.2
3,966,431	+				-0.6
3,966,431	+				-1.3
3,966,431	+				+0.8
3,966,431	+				+1.5
3,966,434	-				-1.1
3,966,434	-				-0.8
3,966,434	-				-1.6
3,966,439	-				+0.3
3,966,439	-				+0.7
3,966,439	-				-0.3
3,966,439	-				-1.1
3,966,444	-				+0.5
3,966,455	+				+0.3
3,966,473	+				-0.1
3,966,479	+				-0.2
3,966,515	-				-1.2
3,966,516	+				+0.3
3,966,516	+				+1.8
3,966,516	+				+0.6
3,966,516	+				-0.2
3,966,524	-				-0.5
3,966,589	+				+2.4
3,966,589	+				-0.5
3,966,597	-				+0.6
3,966,599	+				-0.9
3,966,607	-				-1.6
3,966,607	-				-1.0
3,966,607	-				+0.7
3,966,610	+				+1.5
3,966,653	+				-0.4
3,966,658	+				+1.8
3,966,658	+				+0.0
3,966,661	-				+0.2
3,966,662	-				+1.5
3,966,666	+				+0.2
3,966,719	+		CCNA_03802	0.11	-0.5
3,966,725	+		CCNA_03802	0.12	+1.9
3,966,727	-		CCNA_03802	0.12	-1.7
3,966,732	+		CCNA_03802	0.12	+1.1
3,966,732	+		CCNA_03802	0.12	+0.2
3,966,733	-		CCNA_03802	0.12	+1.0
3,966,733	-		CCNA_03802	0.12	-1.6
3,966,733	-		CCNA_03802	0.12	-2.2
3,966,740	-		CCNA_03802	0.12	-1.3
3,966,740	-		CCNA_03802	0.12	-0.7
3,966,740	-		CCNA_03802	0.12	-1.3
3,966,740	-		CCNA_03802	0.12	-1.5
3,966,785	+		CCNA_03802	0.15	-1.3
3,966,812	+		CCNA_03802	0.16	-0.2
3,966,812	+		CCNA_03802	0.16	+0.7
3,966,820	-		CCNA_03802	0.16	-1.8
3,966,839	+		CCNA_03802	0.17	-0.9
3,966,863	-		CCNA_03802	0.18	-0.3
3,966,911	+		CCNA_03802	0.20	-2.2
3,966,911	+		CCNA_03802	0.20	-0.5
3,966,911	+		CCNA_03802	0.20	+0.2
3,966,911	+		CCNA_03802	0.20	+1.2
3,966,919	-		CCNA_03802	0.21	-0.7
3,966,919	-		CCNA_03802	0.21	-0.7
3,966,919	-		CCNA_03802	0.21	+1.2
3,966,919	-		CCNA_03802	0.21	+0.0
3,966,919	-		CCNA_03802	0.21	+0.9
3,966,936	+		CCNA_03802	0.22	+0.1
3,966,990	-		CCNA_03802	0.24	-0.5
3,966,992	+		CCNA_03802	0.24	-0.5
3,967,039	+		CCNA_03802	0.26	+0.9
3,967,041	+		CCNA_03802	0.26	+1.1
3,967,049	-		CCNA_03802	0.27	-0.2
3,967,063	+		CCNA_03802	0.27	+0.7
3,967,071	-		CCNA_03802	0.28	+3.6
3,967,073	+		CCNA_03802	0.28	+0.0
3,967,073	+		CCNA_03802	0.28	+0.3
3,967,073	+		CCNA_03802	0.28	+0.6
3,967,081	-		CCNA_03802	0.28	+1.0
3,967,088	+		CCNA_03802	0.29	+0.9
3,967,088	+		CCNA_03802	0.29	+1.2
3,967,088	+		CCNA_03802	0.29	+2.1
3,967,096	-		CCNA_03802	0.29	-1.4
3,967,096	-		CCNA_03802	0.29	-1.8
3,967,096	-		CCNA_03802	0.29	+2.6
3,967,111	+		CCNA_03802	0.30	+0.3
3,967,124	-		CCNA_03802	0.30	-1.1
3,967,161	+		CCNA_03802	0.32	+0.5
3,967,165	+		CCNA_03802	0.32	-0.6
3,967,166	+		CCNA_03802	0.32	+1.7
3,967,169	-		CCNA_03802	0.32	-1.2
3,967,169	-		CCNA_03802	0.32	+1.8
3,967,189	+		CCNA_03802	0.33	+1.0
3,967,201	+		CCNA_03802	0.34	+0.1
3,967,207	-		CCNA_03802	0.34	+0.8
3,967,211	+		CCNA_03802	0.34	+0.5
3,967,211	+		CCNA_03802	0.34	+0.7
3,967,229	-		CCNA_03802	0.35	+0.0
3,967,229	-		CCNA_03802	0.35	+0.2
3,967,245	+		CCNA_03802	0.36	-0.1
3,967,268	+		CCNA_03802	0.37	+0.8
3,967,275	+		CCNA_03802	0.37	-0.0
3,967,288	-		CCNA_03802	0.38	+0.0
3,967,343	+		CCNA_03802	0.40	+1.8
3,967,347	-		CCNA_03802	0.41	+0.1
3,967,375	-		CCNA_03802	0.42	+0.1
3,967,377	+		CCNA_03802	0.42	-0.4
3,967,387	+		CCNA_03802	0.42	+2.0
3,967,392	+		CCNA_03802	0.43	+0.5
3,967,392	+		CCNA_03802	0.43	+0.8
3,967,392	+		CCNA_03802	0.43	+0.1
3,967,395	-		CCNA_03802	0.43	+1.2
3,967,397	+		CCNA_03802	0.43	-0.1
3,967,400	-		CCNA_03802	0.43	-1.1
3,967,400	-		CCNA_03802	0.43	+0.4
3,967,400	-				+2.2
3,967,400	-		CCNA_03802	0.43	-0.4
3,967,405	-		CCNA_03802	0.43	-1.1
3,967,431	+		CCNA_03802	0.45	-0.0
3,967,436	+		CCNA_03802	0.45	+1.3
3,967,439	-		CCNA_03802	0.45	-2.8
3,967,439	-		CCNA_03802	0.45	-1.2
3,967,439	-		CCNA_03802	0.45	-1.7
3,967,444	-		CCNA_03802	0.45	+0.5
3,967,453	+		CCNA_03802	0.46	+0.3
3,967,477	+		CCNA_03802	0.47	+0.6
3,967,477	+		CCNA_03802	0.47	-1.1
3,967,485	-		CCNA_03802	0.47	-0.1
3,967,485	-		CCNA_03802	0.47	+1.0
3,967,493	+		CCNA_03802	0.47	-0.6
3,967,493	+		CCNA_03802	0.47	+2.2
3,967,503	+		CCNA_03802	0.48	+0.6
3,967,503	+		CCNA_03802	0.48	+1.9
3,967,508	+		CCNA_03802	0.48	+0.9
3,967,513	+		CCNA_03802	0.48	-0.5
3,967,516	-		CCNA_03802	0.48	+1.0
3,967,533	-		CCNA_03802	0.49	-3.0
3,967,538	+		CCNA_03802	0.49	+1.1
3,967,546	-		CCNA_03802	0.50	-1.1
3,967,553	-		CCNA_03802	0.50	+0.7
3,967,555	-		CCNA_03802	0.50	+1.8
3,967,565	+		CCNA_03802	0.51	+1.0
3,967,565	+		CCNA_03802	0.51	+1.3
3,967,565	+		CCNA_03802	0.51	+2.3
3,967,565	+		CCNA_03802	0.51	+1.1
3,967,565	+		CCNA_03802	0.51	-0.5
3,967,565	+		CCNA_03802	0.51	+0.8
3,967,573	-		CCNA_03802	0.51	-1.6
3,967,573	-		CCNA_03802	0.51	-1.1
3,967,573	-		CCNA_03802	0.51	-1.2
3,967,585	+		CCNA_03802	0.52	+1.0
3,967,610	+		CCNA_03802	0.53	+0.8
3,967,610	+		CCNA_03802	0.53	+1.0
3,967,610	+		CCNA_03802	0.53	+2.0
3,967,611	+		CCNA_03802	0.53	+0.3
3,967,618	-		CCNA_03802	0.53	-2.1
3,967,618	-		CCNA_03802	0.53	-2.2
3,967,618	-		CCNA_03802	0.53	-2.2
3,967,629	+		CCNA_03802	0.54	+0.4
3,967,631	-		CCNA_03802	0.54	-1.2
3,967,637	-		CCNA_03802	0.54	-1.5
3,967,650	-		CCNA_03802	0.55	-2.3
3,967,657	-		CCNA_03802	0.55	+1.7
3,967,659	+		CCNA_03802	0.55	+3.5
3,967,659	+		CCNA_03802	0.55	+1.6
3,967,664	+		CCNA_03802	0.55	+1.3
3,967,666	+		CCNA_03802	0.55	+0.8
3,967,666	+		CCNA_03802	0.55	+0.9
3,967,666	+		CCNA_03802	0.55	+0.9
3,967,666	+		CCNA_03802	0.55	-0.1
3,967,666	+		CCNA_03802	0.55	+1.1
3,967,666	+		CCNA_03802	0.55	+0.2
3,967,666	+		CCNA_03802	0.55	+2.6
3,967,667	-		CCNA_03802	0.55	-0.9
3,967,667	-		CCNA_03802	0.55	-0.1
3,967,674	-		CCNA_03802	0.56	-1.1
3,967,674	-		CCNA_03802	0.56	-2.1
3,967,674	-		CCNA_03802	0.56	+0.5
3,967,696	+		CCNA_03802	0.57	+0.9
3,967,700	+		CCNA_03802	0.57	+2.0
3,967,704	-		CCNA_03802	0.57	-1.1
3,967,704	-		CCNA_03802	0.57	+0.5
3,967,704	-		CCNA_03802	0.57	+0.6
3,967,733	-		CCNA_03802	0.59	-0.1
3,967,758	-		CCNA_03802	0.60	-0.1
3,967,765	+		CCNA_03802	0.60	+1.6
3,967,765	+		CCNA_03802	0.60	+0.8
3,967,795	+		CCNA_03802	0.61	-1.7
3,967,803	-		CCNA_03802	0.62	+2.6
3,967,805	+		CCNA_03802	0.62	+1.4
3,967,805	+		CCNA_03802	0.62	+0.8
3,967,805	+		CCNA_03802	0.62	+0.9
3,967,805	+		CCNA_03802	0.62	+0.5
3,967,805	+		CCNA_03802	0.62	+1.2
3,967,805	+		CCNA_03802	0.62	+1.2
3,967,813	-		CCNA_03802	0.62	+0.9
3,967,813	-		CCNA_03802	0.62	+0.8
3,967,813	-		CCNA_03802	0.62	-0.4
3,967,813	-		CCNA_03802	0.62	+1.5
3,967,813	-		CCNA_03802	0.62	-0.8
3,967,826	+		CCNA_03802	0.63	-0.6
3,967,848	+		CCNA_03802	0.64	-0.1
3,967,864	-		CCNA_03802	0.65	+0.2
3,967,870	+		CCNA_03802	0.65	+0.2
3,967,870	+		CCNA_03802	0.65	+2.3
3,967,870	+		CCNA_03802	0.65	+0.8
3,967,878	-		CCNA_03802	0.65	-1.7
3,967,879	+		CCNA_03802	0.65	+0.7
3,967,907	+		CCNA_03802	0.67	+1.5
3,967,910	-		CCNA_03802	0.67	-1.9
3,967,915	-		CCNA_03802	0.67	-0.8
3,967,915	-		CCNA_03802	0.67	-0.2
3,967,915	-		CCNA_03802	0.67	-2.6
3,967,915	-		CCNA_03802	0.67	+0.0
3,967,941	+		CCNA_03802	0.68	+0.2
3,967,949	-		CCNA_03802	0.69	-1.0
3,967,954	-		CCNA_03802	0.69	+3.2
3,967,954	-		CCNA_03802	0.69	-0.9
3,967,954	-		CCNA_03802	0.69	-0.8
3,967,982	-		CCNA_03802	0.70	+0.8
3,968,009	+		CCNA_03802	0.71	+0.6
3,968,017	-		CCNA_03802	0.72	-2.0
3,968,017	-		CCNA_03802	0.72	-2.1
3,968,076	+		CCNA_03802	0.74	-0.9
3,968,084	-		CCNA_03802	0.75	-0.6
3,968,092	+		CCNA_03802	0.75	+0.4
3,968,092	+		CCNA_03802	0.75	-0.2
3,968,092	+		CCNA_03802	0.75	+0.3
3,968,100	-		CCNA_03802	0.76	+0.4
3,968,115	+		CCNA_03802	0.76	-1.7
3,968,126	+		CCNA_03802	0.77	-0.3
3,968,145	+		CCNA_03802	0.78	+1.2
3,968,153	-		CCNA_03802	0.78	+0.7
3,968,162	+		CCNA_03802	0.78	-0.3
3,968,211	+		CCNA_03802	0.81	+0.2
3,968,226	+		CCNA_03802	0.81	+0.4
3,968,227	+		CCNA_03802	0.81	+0.3
3,968,244	+		CCNA_03802	0.82	+0.7
3,968,249	+		CCNA_03802	0.82	+0.5
3,968,249	+		CCNA_03802	0.82	-1.0
3,968,257	-		CCNA_03802	0.83	-0.8
3,968,298	+		CCNA_03802	0.85	+1.4
3,968,303	+		CCNA_03802	0.85	+2.2
3,968,317	+		CCNA_03802	0.86	+1.8
3,968,321	-		CCNA_03802	0.86	-0.3
3,968,386	-		CCNA_03802	0.89	-0.5
3,968,396	+		CCNA_03802	0.89	+1.6
3,968,416	+				+1.1
3,968,416	+				+0.8
3,968,416	+				+0.9
3,968,424	+				+2.1
3,968,424	-				-1.3
3,968,424	-				-2.6
3,968,475	+				+0.9
3,968,499	+				+1.6
3,968,504	+				+1.4
3,968,507	-				-0.2
3,968,509	+				+1.4
3,968,512	-				+1.3
3,968,514	+				+1.2
3,968,549	+				+1.1
3,968,564	+				+0.8
3,968,564	+				+1.6
3,968,626	+				+3.3
3,968,646	+				+0.3
3,968,646	+				+0.7
3,968,646	+				-0.3
3,968,646	+				+1.3
3,968,646	+				-0.1
3,968,646	+				+1.0
3,968,646	+				-1.5
3,968,646	+				+0.8
3,968,646	+				+0.5
3,968,646	+				+0.5
3,968,646	+				-0.2
3,968,646	+				-0.9
3,968,646	+				+1.8
3,968,646	+				-0.9
3,968,654	-				+1.0
3,968,654	-				-1.3
3,968,654	-				+0.8
3,968,654	-				-1.2
3,968,654	-				+0.4
3,968,654	-				-1.5
3,968,654	-				-0.2
3,968,654	-				+0.8
3,968,654	-				-0.8
3,968,654	-				-1.1
3,968,654	-				+1.8
3,968,654	-				+1.2
3,968,656	-				-1.6
3,968,666	+				-0.5
3,968,666	+				+0.6
3,968,674	-				+0.7
3,968,674	-				+0.5
3,968,698	+				+0.5
3,968,706	-				+0.3
3,968,719	+				-2.2
3,968,755	+				+1.1
3,968,820	+				+0.3
3,968,831	+				-0.1
3,968,863	+				-0.0
3,968,867	+		CCNA_03803	0.10	-1.9
3,968,875	-		CCNA_03803	0.11	+0.5
3,968,903	-		CCNA_03803	0.13	+0.3
3,968,913	+		CCNA_03803	0.14	-0.2
3,968,913	+		CCNA_03803	0.14	+0.1
3,968,913	+		CCNA_03803	0.14	+0.7
3,968,986	-		CCNA_03803	0.21	+0.8
3,968,986	-		CCNA_03803	0.21	-1.6
3,968,988	+		CCNA_03803	0.21	-1.0
3,968,990	-		CCNA_03803	0.21	-0.6
3,968,992	-		CCNA_03803	0.22	+0.5
3,969,004	+		CCNA_03803	0.23	+0.1
3,969,020	+		CCNA_03803	0.24	+0.6
3,969,024	+		CCNA_03803	0.24	+0.0
3,969,025	+		CCNA_03803	0.25	+0.2
3,969,025	+		CCNA_03803	0.25	-1.0
3,969,033	-		CCNA_03803	0.25	-1.0
3,969,088	+		CCNA_03803	0.30	+0.4
3,969,142	-		CCNA_03803	0.35	+1.5
3,969,167	-		CCNA_03803	0.38	-0.4
3,969,207	+		CCNA_03803	0.41	-0.1
3,969,207	+		CCNA_03803	0.41	-1.0
3,969,207	+		CCNA_03803	0.41	-0.7
3,969,207	+		CCNA_03803	0.41	-1.2
3,969,215	-		CCNA_03803	0.42	-0.5
3,969,263	-		CCNA_03803	0.47	+1.0
3,969,277	+		CCNA_03803	0.48	+1.7
3,969,378	+		CCNA_03803	0.57	-0.1
3,969,378	+		CCNA_03803	0.57	+0.7
3,969,378	+				+4.4
3,969,378	+		CCNA_03803	0.57	-0.6
3,969,378	+		CCNA_03803	0.57	-0.8
3,969,378	+		CCNA_03803	0.57	+0.6
3,969,386	-		CCNA_03803	0.58	-1.6
3,969,386	-		CCNA_03803	0.58	-1.3
3,969,386	-		CCNA_03803	0.58	+0.8
3,969,402	+		CCNA_03803	0.59	-1.2
3,969,450	+		CCNA_03803	0.64	+1.7
3,969,450	+		CCNA_03803	0.64	-0.9
3,969,450	+		CCNA_03803	0.64	+0.2
3,969,458	-		CCNA_03803	0.64	-1.9
3,969,458	-		CCNA_03803	0.64	+1.0
3,969,458	-		CCNA_03803	0.64	+0.4
3,969,491	+		CCNA_03803	0.67	-0.2
3,969,517	+		CCNA_03803	0.70	+0.8
3,969,517	+		CCNA_03803	0.70	+1.6
3,969,517	+		CCNA_03803	0.70	+0.1
3,969,517	+		CCNA_03803	0.70	+1.5
3,969,525	-		CCNA_03803	0.71	+1.1
3,969,558	-		CCNA_03803	0.74	+1.1
3,969,579	+		CCNA_03803	0.76	+0.8
3,969,579	+		CCNA_03803	0.76	+0.8
3,969,579	+		CCNA_03803	0.76	-0.7
3,969,597	-		CCNA_03803	0.77	-1.6
3,969,607	-		CCNA_03803	0.78	+0.3
3,969,613	+		CCNA_03803	0.79	+1.3