Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03791

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,954,611	+		CCNA_03788	0.59	+0.9
3,954,631	+		CCNA_03788	0.63	-0.8
3,954,673	+		CCNA_03788	0.71	-1.5
3,954,691	+		CCNA_03788	0.75	-0.5
3,954,691	+		CCNA_03788	0.75	+1.5
3,954,691	+		CCNA_03788	0.75	+0.5
3,954,691	+		CCNA_03788	0.75	+0.8
3,954,691	+		CCNA_03788	0.75	-0.8
3,954,691	+		CCNA_03788	0.75	-1.2
3,954,691	+		CCNA_03788	0.75	-1.5
3,954,691	+		CCNA_03788	0.75	-0.3
3,954,691	+		CCNA_03788	0.75	-1.3
3,954,691	+		CCNA_03788	0.75	+0.7
3,954,723	+		CCNA_03788	0.81	-2.3
3,954,835	+				+1.9
3,954,835	+				+1.4
3,954,835	+				+2.8
3,954,835	+				+0.9
3,954,835	+				+0.5
3,954,843	-				-0.1
3,954,843	-				-0.3
3,954,843	-				-0.0
3,954,843	-				+0.3
3,954,843	-				-0.7
3,954,904	+				+1.2
3,954,911	+		CCNA_03789	0.23	-0.2
3,954,959	-		CCNA_03789	0.35	-1.0
3,954,962	+		CCNA_03789	0.36	-1.7
3,955,010	+		CCNA_03789	0.49	+0.0
3,955,018	-		CCNA_03789	0.51	-0.2
3,955,018	-		CCNA_03789	0.51	-2.2
3,955,033	+		CCNA_03789	0.55	+1.7
3,955,041	-		CCNA_03789	0.57	-1.4
3,955,041	-		CCNA_03789	0.57	-2.2
3,955,066	+		CCNA_03789	0.63	-1.4
3,955,066	+		CCNA_03789	0.63	-0.1
3,955,092	+		CCNA_03789	0.70	+0.1
3,955,092	+		CCNA_03789	0.70	-2.1
3,955,100	-		CCNA_03789	0.72	-0.3
3,955,110	+		CCNA_03789	0.75	+0.5
3,955,150	+		CCNA_03789	0.85	+0.7
3,955,156	-		CCNA_03789	0.87	-0.5
3,955,158	-		CCNA_03789	0.87	-0.5
3,955,164	-		CCNA_03789	0.89	-0.3
3,955,195	-				-1.5
3,955,199	-				+0.2
3,955,214	+				+0.2
3,955,242	+				-1.1
3,955,263	+				-1.0
3,955,271	-				-0.0
3,955,321	+				+0.5
3,955,323	+				+0.8
3,955,398	-		CCNA_03790	0.27	+0.2
3,955,414	+		CCNA_03790	0.33	+1.3
3,955,422	-		CCNA_03790	0.36	+0.4
3,955,426	-		CCNA_03790	0.37	-0.9
3,955,429	+		CCNA_03790	0.38	+2.4
3,955,429	+		CCNA_03790	0.38	+0.7
3,955,429	+		CCNA_03790	0.38	+2.7
3,955,437	-		CCNA_03790	0.41	-0.4
3,955,437	-		CCNA_03790	0.41	-0.9
3,955,437	-		CCNA_03790	0.41	-0.1
3,955,437	-				+2.2
3,955,444	+		CCNA_03790	0.43	+1.3
3,955,452	-		CCNA_03790	0.46	-0.5
3,955,452	-		CCNA_03790	0.46	-0.9
3,955,467	+		CCNA_03790	0.52	-0.0
3,955,507	-		CCNA_03790	0.66	+3.9
3,955,509	+		CCNA_03790	0.67	+1.5
3,955,509	-		CCNA_03790	0.67	-0.7
3,955,547	-		CCNA_03790	0.81	+1.4
3,955,632	-				-1.8
3,955,683	-		CCNA_03791	0.14	-0.1
3,955,683	-		CCNA_03791	0.14	-0.6
3,955,702	+		CCNA_03791	0.17	-2.6
3,955,720	-		CCNA_03791	0.20	+0.0
3,955,726	-		CCNA_03791	0.22	-0.9
3,955,731	-		CCNA_03791	0.22	+1.7
3,955,756	+		CCNA_03791	0.27	-1.3
3,955,782	+		CCNA_03791	0.32	-0.5
3,955,848	-		CCNA_03791	0.43	-0.3
3,955,854	-		CCNA_03791	0.44	+0.0
3,955,864	+		CCNA_03791	0.46	-1.4
3,955,864	+		CCNA_03791	0.46	+0.1
3,955,864	+		CCNA_03791	0.46	-0.8
3,955,864	-		CCNA_03791	0.46	+1.3
3,955,872	-		CCNA_03791	0.48	+0.3
3,955,872	-		CCNA_03791	0.48	-0.4
3,955,872	-		CCNA_03791	0.48	-1.5
3,955,872	-		CCNA_03791	0.48	+0.6
3,955,872	-		CCNA_03791	0.48	-0.3
3,955,872	-		CCNA_03791	0.48	+0.2
3,955,872	-		CCNA_03791	0.48	-0.3
3,955,885	+		CCNA_03791	0.50	+0.3
3,955,897	+		CCNA_03791	0.52	-0.6
3,955,897	+		CCNA_03791	0.52	+1.1
3,955,933	+		CCNA_03791	0.58	+1.2
3,955,943	+		CCNA_03791	0.60	-0.6
3,955,951	-		CCNA_03791	0.62	+4.7
3,955,971	+		CCNA_03791	0.65	-2.2
3,955,981	+		CCNA_03791	0.67	-1.0
3,956,006	-		CCNA_03791	0.71	+0.1
3,956,013	+		CCNA_03791	0.73	-1.8
3,956,020	+		CCNA_03791	0.74	-0.1
3,956,021	-		CCNA_03791	0.74	+1.2
3,956,021	-		CCNA_03791	0.74	+1.1
3,956,070	+		CCNA_03791	0.83	-0.6
3,956,073	-		CCNA_03791	0.83	+4.5
3,956,105	-		CCNA_03791	0.89	+1.6
3,956,105	-		CCNA_03791	0.89	+0.8
3,956,129	-				+2.2
3,956,149	+				+0.5
3,956,149	+				+0.8
3,956,155	+				-1.0
3,956,157	-				+0.9
3,956,189	+				+0.8
3,956,189	+				+0.8
3,956,213	+				-1.6
3,956,226	-				+0.3
3,956,266	-				+1.9
3,956,356	+		CCNA_03792	0.14	-0.9
3,956,356	+		CCNA_03792	0.14	-0.3
3,956,419	+		CCNA_03792	0.25	-0.3
3,956,419	+		CCNA_03792	0.25	+1.1
3,956,429	+		CCNA_03792	0.26	-0.6
3,956,456	-		CCNA_03792	0.31	+0.4
3,956,472	+		CCNA_03792	0.33	-0.2
3,956,472	+		CCNA_03792	0.33	-0.5
3,956,480	-		CCNA_03792	0.34	+0.9
3,956,480	-		CCNA_03792	0.34	+1.8
3,956,480	-		CCNA_03792	0.34	+2.4
3,956,480	-		CCNA_03792	0.34	-0.0
3,956,480	-		CCNA_03792	0.34	+1.5
3,956,490	-		CCNA_03792	0.36	+0.7
3,956,502	+		CCNA_03792	0.38	-0.4
3,956,533	-		CCNA_03792	0.43	+1.1
3,956,540	+		CCNA_03792	0.44	-2.1
3,956,562	+		CCNA_03792	0.48	-0.3
3,956,577	+				+2.2
3,956,577	+		CCNA_03792	0.50	-0.4
3,956,585	-		CCNA_03792	0.51	+0.1
3,956,605	-		CCNA_03792	0.55	+1.5
3,956,605	-		CCNA_03792	0.55	+0.5
3,956,605	-				+1.8
3,956,624	-		CCNA_03792	0.58	+1.1
3,956,629	+		CCNA_03792	0.58	-2.8
3,956,634	+		CCNA_03792	0.59	-0.7
3,956,637	-		CCNA_03792	0.60	+0.6
3,956,674	-		CCNA_03792	0.66	-0.7
3,956,687	+				+1.2
3,956,740	+		CCNA_03792	0.76	+0.4
3,956,790	+		CCNA_03792	0.84	+0.2
3,956,840	+				+0.1
3,956,896	-				+2.7
3,956,896	-				+1.7
3,956,903	-				+1.3