Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03770

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,937,075	+				-0.7
3,937,083	-				-0.3
3,937,083	-				+0.3
3,937,090	+				-0.6
3,937,099	-				+1.3
3,937,139	+				-1.2
3,937,139	+				-2.0
3,937,153	+				-0.9
3,937,153	+				+0.7
3,937,161	-				+0.8
3,937,188	+				+0.1
3,937,196	-				+1.0
3,937,196	-				-0.7
3,937,231	+				-1.1
3,937,238	-				+0.7
3,937,239	-				+0.6
3,937,239	-				+2.9
3,937,265	+				+0.7
3,937,289	-		CCNA_03769	0.11	+1.1
3,937,310	-		CCNA_03769	0.15	+0.5
3,937,314	+		CCNA_03769	0.16	-1.9
3,937,337	-		CCNA_03769	0.21	+0.0
3,937,337	-		CCNA_03769	0.21	+1.7
3,937,347	+		CCNA_03769	0.22	-1.1
3,937,354	+		CCNA_03769	0.24	+1.1
3,937,354	+		CCNA_03769	0.24	-1.1
3,937,362	-		CCNA_03769	0.25	+0.8
3,937,362	-		CCNA_03769	0.25	-0.1
3,937,362	-		CCNA_03769	0.25	+0.7
3,937,364	+		CCNA_03769	0.26	+3.8
3,937,382	+		CCNA_03769	0.29	-0.8
3,937,403	+		CCNA_03769	0.34	-1.2
3,937,403	+		CCNA_03769	0.34	-0.9
3,937,435	-		CCNA_03769	0.40	+0.9
3,937,436	-		CCNA_03769	0.40	+0.9
3,937,442	-		CCNA_03769	0.41	+0.3
3,937,449	-		CCNA_03769	0.43	+1.7
3,937,492	-		CCNA_03769	0.51	-0.9
3,937,514	+		CCNA_03769	0.55	-0.7
3,937,524	+		CCNA_03769	0.57	-1.0
3,937,529	+		CCNA_03769	0.58	-0.2
3,937,537	+		CCNA_03769	0.60	-0.1
3,937,545	-		CCNA_03769	0.62	-0.1
3,937,597	+		CCNA_03769	0.72	-0.1
3,937,605	-		CCNA_03769	0.73	+3.2
3,937,605	-		CCNA_03769	0.73	-0.8
3,937,605	-		CCNA_03769	0.73	-0.2
3,937,605	-		CCNA_03769	0.73	+0.9
3,937,605	-		CCNA_03769	0.73	+1.0
3,937,617	-		CCNA_03769	0.76	+0.3
3,937,617	-		CCNA_03769	0.76	-1.1
3,937,642	+		CCNA_03769	0.81	+0.1
3,937,650	-		CCNA_03769	0.82	+0.5
3,937,650	-		CCNA_03769	0.82	+0.4
3,937,650	-		CCNA_03769	0.82	-0.6
3,937,660	+		CCNA_03769	0.84	+0.0
3,937,668	-		CCNA_03769	0.86	+0.0
3,937,668	-		CCNA_03769	0.86	+0.0
3,937,675	+		CCNA_03769	0.87	-0.9
3,937,677	+		CCNA_03769	0.88	-0.7
3,937,677	+		CCNA_03769	0.88	+0.2
3,937,677	+		CCNA_03769	0.88	-0.2
3,937,677	+		CCNA_03769	0.88	+0.4
3,937,685	-		CCNA_03769	0.89	+0.4
3,937,685	-		CCNA_03769	0.89	-0.8
3,937,716	+				-0.6
3,937,730	-				+0.5
3,937,734	+				-1.1
3,937,742	-				+0.6
3,937,774	+				-0.3
3,937,775	-				+1.0
3,937,804	-				+0.5
3,938,849	+				+2.2
3,938,857	-				+0.9
3,938,857	-				-0.4
3,938,857	-				+1.8
3,938,857	-				+2.2
3,938,885	-				+2.8
3,938,885	-				+2.1
3,938,885	-				+1.9
3,938,885	-				+1.7
3,938,885	-				+3.2
3,938,885	-				+3.3
3,938,885	-				+2.3
3,938,898	+				-2.7
3,938,933	+				+0.0
3,938,983	+				-0.2
3,938,991	-				-1.0
3,939,027	+				-0.3
3,939,037	+				+2.2
3,939,045	-				-0.9
3,939,079	+				-0.8
3,939,079	+				-0.5
3,939,082	+				+1.2
3,939,084	+				-2.5
3,939,084	+				+0.5
3,939,088	-		CCNA_03771	0.10	-0.2
3,939,137	-		CCNA_03771	0.15	+1.4
3,939,153	+		CCNA_03771	0.16	+0.7
3,939,155	-		CCNA_03771	0.17	+0.6
3,939,191	-		CCNA_03771	0.20	-0.9
3,939,218	+		CCNA_03771	0.23	+0.2
3,939,221	-		CCNA_03771	0.23	+0.9
3,939,221	-		CCNA_03771	0.23	-1.5
3,939,241	+		CCNA_03771	0.25	+0.4
3,939,241	+		CCNA_03771	0.25	-0.4
3,939,241	+		CCNA_03771	0.25	+0.7
3,939,249	-		CCNA_03771	0.26	-0.6
3,939,272	+		CCNA_03771	0.28	+0.4
3,939,281	+		CCNA_03771	0.29	+0.5
3,939,300	+		CCNA_03771	0.30	-0.6
3,939,308	-		CCNA_03771	0.31	-0.3
3,939,310	+		CCNA_03771	0.31	+0.1
3,939,323	-		CCNA_03771	0.33	-0.1
3,939,334	+		CCNA_03771	0.34	-2.2
3,939,340	+		CCNA_03771	0.34	-1.0
3,939,350	+		CCNA_03771	0.35	-0.1
3,939,369	+		CCNA_03771	0.37	-0.3
3,939,369	+		CCNA_03771	0.37	-1.2
3,939,369	+		CCNA_03771	0.37	-1.3
3,939,369	+		CCNA_03771	0.37	+1.9
3,939,369	+		CCNA_03771	0.37	-1.2
3,939,369	+		CCNA_03771	0.37	-0.7
3,939,377	-		CCNA_03771	0.38	+1.0
3,939,377	-		CCNA_03771	0.38	+0.3
3,939,377	-		CCNA_03771	0.38	-1.0
3,939,377	-		CCNA_03771	0.38	+0.5
3,939,377	-		CCNA_03771	0.38	+2.0
3,939,377	-		CCNA_03771	0.38	+1.3
3,939,392	+		CCNA_03771	0.39	-1.2
3,939,392	+		CCNA_03771	0.39	-1.0
3,939,400	-		CCNA_03771	0.40	+1.1
3,939,400	-		CCNA_03771	0.40	-2.7
3,939,400	-		CCNA_03771	0.40	-0.7
3,939,400	-		CCNA_03771	0.40	-1.2
3,939,411	+		CCNA_03771	0.41	-0.0
3,939,419	-		CCNA_03771	0.42	-0.0
3,939,440	+		CCNA_03771	0.44	-0.2
3,939,469	-		CCNA_03771	0.47	+0.7
3,939,484	+		CCNA_03771	0.48	-0.6
3,939,503	-		CCNA_03771	0.50	+2.0
3,939,563	+		CCNA_03771	0.56	+0.4
3,939,563	+		CCNA_03771	0.56	+0.2
3,939,563	+		CCNA_03771	0.56	-0.3
3,939,569	-		CCNA_03771	0.56	+1.8
3,939,650	+		CCNA_03771	0.64	+0.8
3,939,672	+		CCNA_03771	0.66	+0.0
3,939,672	+		CCNA_03771	0.66	-0.7
3,939,675	-		CCNA_03771	0.66	-2.3
3,939,680	-		CCNA_03771	0.67	+0.5
3,939,680	-		CCNA_03771	0.67	-1.2
3,939,691	+		CCNA_03771	0.68	+1.1
3,939,693	+		CCNA_03771	0.68	+0.8
3,939,693	+		CCNA_03771	0.68	-0.6
3,939,713	+		CCNA_03771	0.70	-0.4
3,939,713	+		CCNA_03771	0.70	+0.4
3,939,721	-				+1.5
3,939,721	-		CCNA_03771	0.71	-2.2
3,939,721	-		CCNA_03771	0.71	-0.8
3,939,723	+		CCNA_03771	0.71	-0.5
3,939,739	-		CCNA_03771	0.72	-0.5
3,939,739	-		CCNA_03771	0.72	+0.5
3,939,745	+		CCNA_03771	0.73	+0.0
3,939,747	-		CCNA_03771	0.73	-0.8
3,939,754	-		CCNA_03771	0.74	+0.9
3,939,760	+		CCNA_03771	0.74	+1.3
3,939,760	+		CCNA_03771	0.74	+0.4
3,939,770	+				+1.5
3,939,777	+		CCNA_03771	0.76	-0.8
3,939,778	-		CCNA_03771	0.76	-0.1
3,939,780	-		CCNA_03771	0.76	-0.2
3,939,782	+		CCNA_03771	0.77	-0.1
3,939,790	-		CCNA_03771	0.77	-0.1
3,939,826	-		CCNA_03771	0.81	-0.0
3,939,831	-		CCNA_03771	0.81	-1.2