Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03746

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,914,783	-				-0.8
3,914,788	-				-0.7
3,914,799	+				+0.7
3,914,822	+				-1.5
3,914,828	+				+1.5
3,914,833	+				+1.0
3,914,836	-				+0.6
3,914,841	-				+0.1
3,914,875	+		CCNA_03745	0.14	-2.1
3,914,877	+		CCNA_03745	0.14	-1.0
3,914,885	-		CCNA_03745	0.15	+0.5
3,914,903	-		CCNA_03745	0.17	-1.1
3,914,984	-		CCNA_03745	0.26	+0.3
3,914,984	-		CCNA_03745	0.26	-0.8
3,914,984	-		CCNA_03745	0.26	-0.9
3,914,984	-		CCNA_03745	0.26	+1.3
3,914,984	-		CCNA_03745	0.26	-0.9
3,914,984	-				+2.2
3,915,017	-		CCNA_03745	0.30	-0.3
3,915,019	+		CCNA_03745	0.31	-0.8
3,915,027	-		CCNA_03745	0.32	-2.2
3,915,043	-		CCNA_03745	0.33	+0.1
3,915,062	+		CCNA_03745	0.36	+1.1
3,915,093	+		CCNA_03745	0.39	+0.2
3,915,149	+		CCNA_03745	0.46	-1.7
3,915,211	-		CCNA_03745	0.53	+0.8
3,915,231	-		CCNA_03745	0.56	-0.2
3,915,233	+		CCNA_03745	0.56	-0.9
3,915,238	+		CCNA_03745	0.57	-0.9
3,915,238	+		CCNA_03745	0.57	-0.6
3,915,238	+		CCNA_03745	0.57	+0.8
3,915,246	-		CCNA_03745	0.58	+1.8
3,915,246	-		CCNA_03745	0.58	-1.2
3,915,246	-		CCNA_03745	0.58	-0.2
3,915,246	-		CCNA_03745	0.58	-0.3
3,915,246	-		CCNA_03745	0.58	+0.0
3,915,246	-		CCNA_03745	0.58	-0.8
3,915,253	+		CCNA_03745	0.58	-1.1
3,915,277	-		CCNA_03745	0.61	-0.9
3,915,325	-		CCNA_03745	0.67	-0.5
3,915,354	-		CCNA_03745	0.70	+0.6
3,915,354	-		CCNA_03745	0.70	+0.2
3,915,363	+		CCNA_03745	0.71	+1.7
3,915,401	-		CCNA_03745	0.76	-0.7
3,915,422	-		CCNA_03745	0.78	-0.4
3,915,440	-		CCNA_03745	0.81	-0.7
3,915,485	+		CCNA_03745	0.86	-1.3
3,915,533	+				-0.7
3,915,548	+				+1.8
3,915,556	-				-2.1
3,915,556	-				-0.3
3,915,576	+				-2.2
3,915,576	+				-0.7
3,915,581	+				+1.0
3,915,581	+				+1.7
3,915,581	+				-0.4
3,915,584	-				+0.2
3,915,584	-				-1.2
3,915,584	-				+1.0
3,915,584	-				-0.2
3,915,584	-				-0.2
3,915,586	+				-0.3
3,915,589	-				-0.7
3,915,589	-				-1.3
3,915,589	-				-1.5
3,915,592	+				+0.4
3,915,705	-				-1.5
3,915,705	-				-1.7
3,915,725	+				-0.3
3,915,725	+				+0.0
3,915,733	-				-0.6
3,915,733	-				+0.8
3,915,764	+				+0.7
3,915,764	+				+0.4
3,915,764	+				+1.2
3,915,764	+				+0.5
3,915,764	+				-0.2
3,915,764	+				-0.9
3,915,764	+				-0.3
3,915,764	+				-1.0
3,915,764	+				-1.1
3,915,764	+				-0.5
3,915,764	+				-1.0
3,915,764	+				-0.6
3,915,764	+				+0.7
3,915,764	+				+0.7
3,915,764	+				-0.3
3,915,772	-				+0.0
3,915,772	-				+1.5
3,915,772	-				-0.9
3,915,772	-				+1.2
3,915,772	-				-1.6
3,915,780	+				-0.1
3,915,790	+				+3.1
3,915,806	-				-0.5
3,915,853	-				+0.2
3,915,862	+				+0.0
3,915,886	-				-0.3
3,915,960	-		CCNA_03746	0.15	-0.3
3,915,966	+		CCNA_03746	0.16	+1.4
3,915,967	-		CCNA_03746	0.16	-1.0
3,915,981	+		CCNA_03746	0.17	-1.1
3,915,984	+		CCNA_03746	0.17	-0.4
3,915,989	+		CCNA_03746	0.18	+0.1
3,915,994	+		CCNA_03746	0.18	+0.4
3,916,002	-		CCNA_03746	0.19	-0.3
3,916,020	-		CCNA_03746	0.20	-1.9
3,916,040	+		CCNA_03746	0.22	-0.5
3,916,040	+		CCNA_03746	0.22	+0.6
3,916,048	-		CCNA_03746	0.23	+0.2
3,916,048	-		CCNA_03746	0.23	+0.7
3,916,057	+		CCNA_03746	0.24	-0.6
3,916,157	-		CCNA_03746	0.32	+0.0
3,916,159	+		CCNA_03746	0.32	-0.5
3,916,159	+		CCNA_03746	0.32	-1.4
3,916,160	+		CCNA_03746	0.32	+0.1
3,916,184	-		CCNA_03746	0.34	+1.0
3,916,208	+		CCNA_03746	0.36	+2.0
3,916,265	-		CCNA_03746	0.41	-1.4
3,916,274	+		CCNA_03746	0.42	+1.4
3,916,334	+		CCNA_03746	0.47	+0.6
3,916,341	-		CCNA_03746	0.48	+0.2
3,916,362	+		CCNA_03746	0.49	-0.1
3,916,366	+		CCNA_03746	0.50	+0.2
3,916,366	+		CCNA_03746	0.50	-0.6
3,916,374	-		CCNA_03746	0.51	-0.9
3,916,514	+		CCNA_03746	0.62	+1.7
3,916,522	-				+3.2
3,916,522	-		CCNA_03746	0.63	-1.2
3,916,522	-		CCNA_03746	0.63	-0.8
3,916,592	+		CCNA_03746	0.69	-1.0
3,916,596	-		CCNA_03746	0.69	-1.4
3,916,649	+		CCNA_03746	0.74	+0.4
3,916,649	+		CCNA_03746	0.74	+0.5
3,916,649	+		CCNA_03746	0.74	-0.5
3,916,649	+		CCNA_03746	0.74	+0.8
3,916,649	+		CCNA_03746	0.74	+1.6
3,916,649	+		CCNA_03746	0.74	+0.1
3,916,649	+		CCNA_03746	0.74	+0.2
3,916,649	+		CCNA_03746	0.74	+0.1
3,916,649	+		CCNA_03746	0.74	+0.2
3,916,649	+		CCNA_03746	0.74	+0.3
3,916,649	+		CCNA_03746	0.74	+0.9
3,916,649	+		CCNA_03746	0.74	+1.1
3,916,655	+		CCNA_03746	0.74	+0.4
3,916,657	-		CCNA_03746	0.75	-0.6
3,916,657	-		CCNA_03746	0.75	-1.2
3,916,657	-		CCNA_03746	0.75	-0.7
3,916,657	-		CCNA_03746	0.75	-0.3
3,916,657	-		CCNA_03746	0.75	-1.6
3,916,657	-		CCNA_03746	0.75	-0.3
3,916,657	-		CCNA_03746	0.75	+1.0
3,916,657	-		CCNA_03746	0.75	+1.2
3,916,657	-		CCNA_03746	0.75	+1.2
3,916,657	-		CCNA_03746	0.75	-2.1
3,916,709	-		CCNA_03746	0.79	+0.2
3,916,709	-		CCNA_03746	0.79	-0.2
3,916,737	-		CCNA_03746	0.81	-1.5
3,916,742	-		CCNA_03746	0.82	-1.5
3,916,755	-		CCNA_03746	0.83	+0.6
3,916,797	+		CCNA_03746	0.86	+2.2
3,916,809	+		CCNA_03746	0.88	-0.4
3,916,811	+		CCNA_03746	0.88	+0.5
3,916,811	+		CCNA_03746	0.88	+1.2
3,916,811	+		CCNA_03746	0.88	-0.9
3,916,811	+		CCNA_03746	0.88	+1.3
3,916,811	+		CCNA_03746	0.88	+0.9
3,916,811	+		CCNA_03746	0.88	+0.1
3,916,811	+		CCNA_03746	0.88	+0.2
3,916,811	+		CCNA_03746	0.88	+0.1
3,916,819	-		CCNA_03746	0.88	-1.1
3,916,819	-		CCNA_03746	0.88	-0.3
3,916,819	-		CCNA_03746	0.88	+1.6
3,916,819	-		CCNA_03746	0.88	-1.1
3,916,826	+		CCNA_03746	0.89	+0.3
3,916,850	+				-0.7
3,916,855	+				-0.6
3,916,869	+				-0.0
3,916,895	-				+1.5
3,916,897	+				+0.3
3,916,905	-				-0.7
3,916,917	+				-0.6
3,916,935	+				-0.6
3,916,982	-				+0.2
3,916,995	+				+0.2
3,917,003	-				-0.9
3,917,011	+				+0.3
3,917,017	-				+2.8
3,917,017	-				+2.5
3,917,029	-				-1.3
3,917,044	-				-2.0
3,917,089	+				+0.2
3,917,097	-				-0.4
3,917,183	+				+1.2
3,917,194	+				-1.0
3,917,194	+				+0.3
3,917,195	+		CCNA_03747	0.10	+1.7
3,917,216	+		CCNA_03747	0.12	+2.2
3,917,227	+		CCNA_03747	0.13	-1.7
3,917,235	-		CCNA_03747	0.14	+1.4
3,917,235	-		CCNA_03747	0.14	+0.4
3,917,242	+		CCNA_03747	0.15	-0.3
3,917,250	-		CCNA_03747	0.15	-1.1
3,917,250	-		CCNA_03747	0.15	+0.1
3,917,291	+		CCNA_03747	0.19	+0.0
3,917,310	+		CCNA_03747	0.21	-0.1
3,917,337	-		CCNA_03747	0.24	+0.5
3,917,381	+		CCNA_03747	0.28	-0.3
3,917,381	+		CCNA_03747	0.28	+1.7
3,917,404	+		CCNA_03747	0.30	+0.0
3,917,440	+		CCNA_03747	0.34	+1.8
3,917,443	-		CCNA_03747	0.34	+1.2
3,917,459	+		CCNA_03747	0.36	+3.8
3,917,459	+		CCNA_03747	0.36	+1.7
3,917,459	+		CCNA_03747	0.36	+0.4
3,917,467	-		CCNA_03747	0.37	+2.2
3,917,467	-		CCNA_03747	0.37	+0.2
3,917,467	-		CCNA_03747	0.37	-0.1
3,917,467	-		CCNA_03747	0.37	+1.5
3,917,467	-		CCNA_03747	0.37	+1.2
3,917,471	+		CCNA_03747	0.37	+0.0
3,917,473	-		CCNA_03747	0.37	+0.5
3,917,479	-		CCNA_03747	0.38	+1.2
3,917,492	+		CCNA_03747	0.39	+1.8
3,917,515	-		CCNA_03747	0.41	+1.4
3,917,520	-		CCNA_03747	0.42	-0.7
3,917,550	+		CCNA_03747	0.45	+0.2
3,917,573	+		CCNA_03747	0.47	-1.3
3,917,585	-		CCNA_03747	0.48	-1.2
3,917,653	+		CCNA_03747	0.55	+1.5
3,917,661	-		CCNA_03747	0.55	+0.1
3,917,679	-		CCNA_03747	0.57	-0.3
3,917,686	+				+2.2
3,917,734	+		CCNA_03747	0.63	+1.8
3,917,745	+		CCNA_03747	0.64	+0.1
3,917,825	+		CCNA_03747	0.71	+0.5
3,917,830	+		CCNA_03747	0.72	-0.2
3,917,830	+		CCNA_03747	0.72	-0.9
3,917,835	+		CCNA_03747	0.72	+0.5
3,917,849	+		CCNA_03747	0.74	+0.5
3,917,890	+		CCNA_03747	0.78	+0.4
3,917,898	-		CCNA_03747	0.79	-0.5
3,917,898	-		CCNA_03747	0.79	+0.2
3,917,898	-		CCNA_03747	0.79	+0.2
3,917,898	-		CCNA_03747	0.79	+1.2
3,917,898	-		CCNA_03747	0.79	-0.3