Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03727

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,895,593	+				-0.9
3,895,602	-				-1.3
3,895,641	-				-0.4
3,895,644	+				+1.5
3,895,667	+				-0.7
3,895,720	-				+0.2
3,895,726	+				+1.6
3,895,793	+		CCNA_03727	0.14	+0.9
3,895,815	-		CCNA_03727	0.16	+0.9
3,895,816	-		CCNA_03727	0.16	-0.8
3,895,848	+		CCNA_03727	0.19	+1.2
3,895,856	-		CCNA_03727	0.20	-1.3
3,895,873	+		CCNA_03727	0.22	-0.0
3,895,873	+		CCNA_03727	0.22	-0.1
3,895,873	+		CCNA_03727	0.22	-2.0
3,895,881	-		CCNA_03727	0.23	-0.6
3,895,881	-		CCNA_03727	0.23	-1.3
3,895,884	+		CCNA_03727	0.23	-0.6
3,895,892	-		CCNA_03727	0.24	+0.5
3,895,905	+		CCNA_03727	0.25	-3.7
3,895,905	+		CCNA_03727	0.25	-0.2
3,895,974	+		CCNA_03727	0.32	-0.9
3,895,982	-		CCNA_03727	0.33	-1.1
3,895,991	+		CCNA_03727	0.34	+0.6
3,896,011	-		CCNA_03727	0.36	-0.9
3,896,012	-		CCNA_03727	0.36	-1.1
3,896,025	-		CCNA_03727	0.37	-0.1
3,896,047	-		CCNA_03727	0.40	+0.8
3,896,067	+		CCNA_03727	0.42	-1.5
3,896,075	-		CCNA_03727	0.42	+0.2
3,896,080	-		CCNA_03727	0.43	-0.4
3,896,127	+		CCNA_03727	0.48	-0.3
3,896,128	-		CCNA_03727	0.48	-1.5
3,896,128	-		CCNA_03727	0.48	+0.5
3,896,174	+		CCNA_03727	0.52	-0.7
3,896,182	-		CCNA_03727	0.53	+1.0
3,896,198	-		CCNA_03727	0.55	+0.8
3,896,202	+		CCNA_03727	0.55	-0.3
3,896,202	+		CCNA_03727	0.55	-2.9
3,896,210	-		CCNA_03727	0.56	-1.0
3,896,212	-		CCNA_03727	0.56	-0.3
3,896,225	+		CCNA_03727	0.58	-0.8
3,896,225	-		CCNA_03727	0.58	-0.3
3,896,233	-		CCNA_03727	0.58	+0.0
3,896,235	-		CCNA_03727	0.59	+0.3
3,896,235	-		CCNA_03727	0.59	-0.9
3,896,256	-		CCNA_03727	0.61	+0.8
3,896,261	+		CCNA_03727	0.61	-0.8
3,896,261	+		CCNA_03727	0.61	-1.1
3,896,261	+		CCNA_03727	0.61	-0.5
3,896,261	+		CCNA_03727	0.61	-3.1
3,896,261	+		CCNA_03727	0.61	-0.0
3,896,261	+		CCNA_03727	0.61	+0.2
3,896,261	+		CCNA_03727	0.61	+0.8
3,896,269	-		CCNA_03727	0.62	-1.3
3,896,269	-		CCNA_03727	0.62	-0.7
3,896,269	-		CCNA_03727	0.62	-0.8
3,896,269	-		CCNA_03727	0.62	-0.9
3,896,269	-		CCNA_03727	0.62	-1.1
3,896,295	+		CCNA_03727	0.65	-1.5
3,896,297	+		CCNA_03727	0.65	+1.3
3,896,297	+		CCNA_03727	0.65	-2.1
3,896,297	+		CCNA_03727	0.65	+0.1
3,896,297	+		CCNA_03727	0.65	-1.5
3,896,297	+		CCNA_03727	0.65	-1.0
3,896,305	-		CCNA_03727	0.66	-0.1
3,896,305	-		CCNA_03727	0.66	-0.7
3,896,305	-		CCNA_03727	0.66	-1.6
3,896,358	-		CCNA_03727	0.71	+1.2
3,896,378	+		CCNA_03727	0.73	-1.7
3,896,386	+		CCNA_03727	0.74	-0.9
3,896,386	-		CCNA_03727	0.74	+1.1
3,896,392	-		CCNA_03727	0.75	-0.2
3,896,393	-		CCNA_03727	0.75	-0.1
3,896,413	+		CCNA_03727	0.77	+1.2
3,896,416	-		CCNA_03727	0.77	-1.5
3,896,416	-		CCNA_03727	0.77	-2.0
3,896,438	+		CCNA_03727	0.79	-1.7
3,896,438	+		CCNA_03727	0.79	-0.8
3,896,438	+		CCNA_03727	0.79	+0.2
3,896,438	+		CCNA_03727	0.79	+0.2
3,896,446	-		CCNA_03727	0.80	-1.6
3,896,446	-		CCNA_03727	0.80	-1.6
3,896,446	-		CCNA_03727	0.80	-1.6
3,896,446	-		CCNA_03727	0.80	-0.1
3,896,451	-		CCNA_03727	0.81	-1.5
3,896,451	-		CCNA_03727	0.81	-1.9
3,896,491	+		CCNA_03727	0.85	-1.9
3,896,553	-				-0.6
3,896,564	+				+2.0
3,896,564	+				-3.1
3,896,570	-				-0.2
3,896,570	-				+0.2
3,896,570	-				-0.8
3,896,582	+				-0.1
3,896,582	+				-1.5
3,896,582	+				+0.0
3,896,582	+				+0.1
3,896,582	+				+1.2
3,896,587	+				-1.2
3,896,590	-				+0.2
3,896,590	-				+0.8
3,896,590	-				-0.6
3,896,590	-				-0.8
3,896,590	-				+0.0
3,896,590	-				-1.4
3,896,590	-				+0.2
3,896,595	-				+0.2
3,896,607	-				-1.3
3,896,612	+				-0.9
3,896,659	+				+1.7
3,896,667	-				+0.5
3,896,718	+				-0.1
3,896,772	+				+0.7
3,896,780	-				-0.4
3,896,792	+		CCNA_03728	0.13	-1.0
3,896,792	+		CCNA_03728	0.13	-0.6
3,896,792	+		CCNA_03728	0.13	-1.4
3,896,800	-		CCNA_03728	0.16	+1.5
3,896,800	-		CCNA_03728	0.16	-1.3
3,896,836	-		CCNA_03728	0.30	+1.2
3,896,838	-		CCNA_03728	0.31	+1.3
3,896,838	-		CCNA_03728	0.31	-1.9
3,896,838	-		CCNA_03728	0.31	+0.2
3,896,838	-		CCNA_03728	0.31	-0.4
3,896,862	+		CCNA_03728	0.41	-0.5
3,896,880	-		CCNA_03728	0.48	+0.2
3,896,896	+		CCNA_03728	0.55	-0.3
3,896,904	-		CCNA_03728	0.58	-0.6
3,897,003	+				+0.4
3,897,008	+				+0.5
3,897,017	-				-0.3
3,897,017	-				+2.4
3,897,033	+				-1.0
3,897,033	+				-0.3
3,897,033	+				+1.0
3,897,033	+				+1.8
3,897,041	-				+1.0
3,897,041	-				-0.8
3,897,041	-				-0.6
3,897,041	-				+0.6
3,897,041	-				+0.9
3,897,041	-				-0.0
3,897,041	-				-0.2
3,897,041	-				+0.2
3,897,050	-				+2.2
3,897,107	-				+1.5
3,897,123	+				-0.3
3,897,186	-				-1.8
3,897,244	-		CCNA_03729	0.15	+0.8
3,897,288	-		CCNA_03729	0.22	+0.0
3,897,288	-		CCNA_03729	0.22	-1.8
3,897,289	-				+1.2
3,897,371	+		CCNA_03729	0.35	-0.3
3,897,579	-		CCNA_03729	0.67	+2.2
3,897,581	+		CCNA_03729	0.67	+0.0
3,897,590	-		CCNA_03729	0.68	+0.0