Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03699

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,864,773	-		CCNA_03697	0.12	+0.1
3,864,773	-		CCNA_03697	0.12	+0.4
3,864,773	-		CCNA_03697	0.12	-0.7
3,864,814	+		CCNA_03697	0.19	-0.7
3,864,822	-		CCNA_03697	0.20	-0.5
3,864,842	+		CCNA_03697	0.24	-0.1
3,864,845	-		CCNA_03697	0.25	-0.4
3,864,855	-		CCNA_03697	0.26	-1.6
3,864,886	-		CCNA_03697	0.32	-0.7
3,864,888	+		CCNA_03697	0.32	+0.2
3,864,909	+		CCNA_03697	0.36	-0.0
3,864,926	+		CCNA_03697	0.39	+1.2
3,864,964	+		CCNA_03697	0.46	-0.4
3,864,964	+		CCNA_03697	0.46	+2.2
3,864,964	+		CCNA_03697	0.46	-0.5
3,864,964	+		CCNA_03697	0.46	-0.3
3,864,964	+		CCNA_03697	0.46	+0.1
3,864,964	+		CCNA_03697	0.46	-1.4
3,864,964	+		CCNA_03697	0.46	+0.9
3,864,964	+		CCNA_03697	0.46	+0.1
3,864,972	-		CCNA_03697	0.47	+1.1
3,864,972	-		CCNA_03697	0.47	-0.1
3,864,972	-		CCNA_03697	0.47	-0.9
3,864,972	-		CCNA_03697	0.47	-0.4
3,864,972	-		CCNA_03697	0.47	-1.4
3,864,972	-		CCNA_03697	0.47	+0.4
3,864,972	-		CCNA_03697	0.47	-2.4
3,864,972	-		CCNA_03697	0.47	-1.4
3,864,972	-		CCNA_03697	0.47	-0.9
3,864,972	-		CCNA_03697	0.47	-1.8
3,864,995	-		CCNA_03697	0.51	-1.0
3,865,140	+		CCNA_03697	0.77	+0.5
3,865,147	+		CCNA_03697	0.79	+1.6
3,865,155	+		CCNA_03697	0.80	-0.1
3,865,155	-		CCNA_03697	0.80	-0.7
3,865,155	-		CCNA_03697	0.80	+0.6
3,865,163	-		CCNA_03697	0.82	-0.5
3,865,188	+		CCNA_03697	0.86	-1.1
3,865,195	+		CCNA_03697	0.87	+0.2
3,865,293	-				-1.2
3,865,301	-		CCNA_03698	0.12	-0.2
3,865,311	-		CCNA_03698	0.14	-1.9
3,865,346	+		CCNA_03698	0.22	+0.0
3,865,348	+		CCNA_03698	0.23	+0.9
3,865,356	-		CCNA_03698	0.24	-2.9
3,865,378	-		CCNA_03698	0.29	-1.0
3,865,383	+		CCNA_03698	0.31	-0.1
3,865,460	-		CCNA_03698	0.48	+0.6
3,865,481	-		CCNA_03698	0.53	+0.9
3,865,486	-		CCNA_03698	0.54	-0.8
3,865,551	-		CCNA_03698	0.69	+0.0
3,865,634	-		CCNA_03698	0.88	-1.6
3,865,735	+				+1.0
3,865,740	-				-1.6
3,865,761	-				-1.1
3,865,790	-				+1.8
3,865,821	-				+0.7
3,865,916	+				+1.3
3,865,929	-				-0.4
3,865,937	-				-0.1
3,865,970	-				+0.1
3,865,971	+				+1.0
3,865,977	-				+0.8
3,865,981	+				+0.4
3,865,990	-				-1.0
3,866,007	-				-1.3
3,866,023	+				+0.0
3,866,031	-				+0.6
3,866,056	-				+0.2
3,866,064	-		CCNA_03699	0.10	+0.0
3,866,064	-		CCNA_03699	0.10	-1.5
3,866,064	-		CCNA_03699	0.10	-1.1
3,866,087	+		CCNA_03699	0.11	+0.3
3,866,105	-		CCNA_03699	0.12	-0.9
3,866,111	+		CCNA_03699	0.12	+0.0
3,866,155	+		CCNA_03699	0.13	-0.6
3,866,194	+		CCNA_03699	0.15	-0.8
3,866,194	+		CCNA_03699	0.15	-1.2
3,866,194	+		CCNA_03699	0.15	+1.1
3,866,202	-		CCNA_03699	0.15	-2.2
3,866,202	-		CCNA_03699	0.15	-0.3
3,866,214	+		CCNA_03699	0.16	-0.9
3,866,227	+		CCNA_03699	0.16	-0.8
3,866,243	+		CCNA_03699	0.17	-0.1
3,866,251	-		CCNA_03699	0.17	-1.7
3,866,271	+		CCNA_03699	0.18	-1.6
3,866,298	-		CCNA_03699	0.18	+0.6
3,866,316	+		CCNA_03699	0.19	-0.0
3,866,332	-		CCNA_03699	0.20	-0.6
3,866,459	+		CCNA_03699	0.24	-2.2
3,866,467	-		CCNA_03699	0.24	+1.2
3,866,488	+		CCNA_03699	0.25	+1.0
3,866,488	+		CCNA_03699	0.25	+0.7
3,866,496	-		CCNA_03699	0.25	+0.0
3,866,518	+		CCNA_03699	0.26	-1.9
3,866,539	+		CCNA_03699	0.27	+2.8
3,866,547	-		CCNA_03699	0.27	+0.0
3,866,547	-		CCNA_03699	0.27	-1.5
3,866,549	+		CCNA_03699	0.27	+1.3
3,866,570	-		CCNA_03699	0.28	-1.9
3,866,587	+		CCNA_03699	0.29	-0.5
3,866,595	-		CCNA_03699	0.29	+3.9
3,866,605	-		CCNA_03699	0.29	-0.7
3,866,610	+		CCNA_03699	0.29	+1.3
3,866,636	+		CCNA_03699	0.30	+0.3
3,866,644	-		CCNA_03699	0.31	-0.4
3,866,651	-		CCNA_03699	0.31	+1.5
3,866,719	+		CCNA_03699	0.33	-0.3
3,866,728	+		CCNA_03699	0.34	-0.3
3,866,737	-		CCNA_03699	0.34	-2.0
3,866,744	+		CCNA_03699	0.34	+0.1
3,866,788	+		CCNA_03699	0.36	+0.4
3,866,791	-		CCNA_03699	0.36	-0.8
3,866,809	+		CCNA_03699	0.36	-0.4
3,866,809	+		CCNA_03699	0.36	+1.6
3,866,817	-		CCNA_03699	0.37	-0.2
3,866,854	+		CCNA_03699	0.38	+0.2
3,866,854	+		CCNA_03699	0.38	+0.4
3,866,854	+		CCNA_03699	0.38	+1.9
3,866,854	+		CCNA_03699	0.38	+1.0
3,866,854	+		CCNA_03699	0.38	+2.1
3,866,862	-		CCNA_03699	0.38	+0.6
3,866,862	-		CCNA_03699	0.38	+0.5
3,866,880	-		CCNA_03699	0.39	-0.9
3,866,897	+		CCNA_03699	0.40	+1.8
3,866,897	+		CCNA_03699	0.40	+0.1
3,866,897	+		CCNA_03699	0.40	+0.3
3,866,897	+		CCNA_03699	0.40	+0.4
3,866,897	+		CCNA_03699	0.40	+2.8
3,866,905	-		CCNA_03699	0.40	+0.0
3,866,905	-		CCNA_03699	0.40	+0.8
3,866,926	+		CCNA_03699	0.41	+1.7
3,866,934	-		CCNA_03699	0.41	-1.2
3,866,934	-		CCNA_03699	0.41	+0.1
3,866,934	-		CCNA_03699	0.41	+2.2
3,866,952	-		CCNA_03699	0.41	+1.1
3,866,961	+		CCNA_03699	0.42	+1.1
3,866,961	+		CCNA_03699	0.42	-1.3
3,866,969	-		CCNA_03699	0.42	-0.3
3,867,005	+		CCNA_03699	0.43	+1.0
3,867,005	+		CCNA_03699	0.43	+1.1
3,867,005	-		CCNA_03699	0.43	-1.3
3,867,010	+		CCNA_03699	0.43	+1.1
3,867,010	-		CCNA_03699	0.43	-0.5
3,867,035	+		CCNA_03699	0.44	+0.5
3,867,035	+		CCNA_03699	0.44	-0.3
3,867,093	+		CCNA_03699	0.46	-1.0
3,867,183	+		CCNA_03699	0.50	-2.8
3,867,192	-		CCNA_03699	0.50	+1.2
3,867,194	+		CCNA_03699	0.50	+0.7
3,867,202	-		CCNA_03699	0.50	+1.0
3,867,274	+		CCNA_03699	0.53	-0.3
3,867,282	-		CCNA_03699	0.53	-1.5
3,867,351	-		CCNA_03699	0.55	-0.1
3,867,364	-		CCNA_03699	0.56	-2.5
3,867,373	+		CCNA_03699	0.56	+1.6
3,867,435	+		CCNA_03699	0.58	+1.4
3,867,435	+		CCNA_03699	0.58	+2.6
3,867,435	+		CCNA_03699	0.58	+1.0
3,867,435	+		CCNA_03699	0.58	+1.8
3,867,443	-		CCNA_03699	0.59	-2.4
3,867,443	-		CCNA_03699	0.59	-0.1
3,867,443	-		CCNA_03699	0.59	-0.0
3,867,443	-		CCNA_03699	0.59	-1.1
3,867,477	+		CCNA_03699	0.60	+0.7
3,867,502	-		CCNA_03699	0.61	-0.4
3,867,608	+		CCNA_03699	0.64	+0.7
3,867,630	-		CCNA_03699	0.65	+0.9
3,867,630	-		CCNA_03699	0.65	+0.1
3,867,643	-		CCNA_03699	0.66	+1.2
3,867,716	-		CCNA_03699	0.68	+0.3
3,867,727	+		CCNA_03699	0.69	+1.5
3,867,727	+		CCNA_03699	0.69	+1.6
3,867,735	-		CCNA_03699	0.69	+2.0
3,867,735	-		CCNA_03699	0.69	+1.2
3,867,743	+		CCNA_03699	0.69	+1.3
3,867,743	+		CCNA_03699	0.69	+0.9
3,867,743	+		CCNA_03699	0.69	+0.3
3,867,751	-		CCNA_03699	0.70	+2.5
3,867,751	-		CCNA_03699	0.70	+0.9
3,867,768	+		CCNA_03699	0.70	+1.3
3,867,776	-		CCNA_03699	0.70	-0.4
3,867,781	+		CCNA_03699	0.71	+2.3
3,867,806	+		CCNA_03699	0.71	+0.9
3,867,814	-		CCNA_03699	0.72	+2.1
3,867,829	-		CCNA_03699	0.72	-0.0
3,867,835	+		CCNA_03699	0.72	+0.6
3,867,840	+		CCNA_03699	0.73	+2.0
3,867,843	-		CCNA_03699	0.73	+1.8
3,867,845	+		CCNA_03699	0.73	+0.9
3,867,890	-				+2.0
3,867,890	-		CCNA_03699	0.74	+0.3
3,867,904	-		CCNA_03699	0.75	+0.4
3,867,963	+		CCNA_03699	0.77	+1.4
3,867,971	-		CCNA_03699	0.77	+1.4
3,867,989	+		CCNA_03699	0.78	+1.0
3,867,994	+		CCNA_03699	0.78	+0.6
3,868,002	-		CCNA_03699	0.78	+1.1
3,868,004	+		CCNA_03699	0.78	+2.2
3,868,024	+		CCNA_03699	0.79	+1.3
3,868,059	-		CCNA_03699	0.80	+1.3
3,868,060	+		CCNA_03699	0.80	+1.3
3,868,064	-		CCNA_03699	0.81	+0.3
3,868,083	-		CCNA_03699	0.81	-1.6
3,868,083	-		CCNA_03699	0.81	+0.5
3,868,088	-		CCNA_03699	0.81	+0.5
3,868,109	+		CCNA_03699	0.82	+1.5
3,868,109	+		CCNA_03699	0.82	+1.5
3,868,142	+		CCNA_03699	0.83	+0.8
3,868,144	+		CCNA_03699	0.83	+1.8
3,868,144	+		CCNA_03699	0.83	+2.0
3,868,158	+		CCNA_03699	0.84	+0.2
3,868,166	-		CCNA_03699	0.84	-0.9
3,868,213	-		CCNA_03699	0.86	+0.4
3,868,249	-		CCNA_03699	0.87	+0.3
3,868,249	-		CCNA_03699	0.87	+1.5
3,868,256	+		CCNA_03699	0.87	+1.6
3,868,291	-		CCNA_03699	0.88	+0.3
3,868,340	+				+1.7
3,868,342	+				+1.5
3,868,399	+				+0.8
3,868,411	+				-1.7
3,868,432	+				+1.8
3,868,439	+				+1.6
3,868,440	-				+0.7
3,868,454	-				+1.0
3,868,454	-				+1.6
3,868,456	+				+1.8
3,868,456	+				+0.8
3,868,456	+				+1.8
3,868,457	+				+2.3
3,868,464	-				+1.0
3,868,464	-				+0.5
3,868,464	-				+0.4
3,868,465	-				+0.2
3,868,465	-				+1.2
3,868,474	+				+1.3
3,868,474	+				+1.8
3,868,479	+				+1.9
3,868,487	-				+0.3
3,868,495	+				+1.9
3,868,498	-				+0.2
3,868,498	-				-1.0
3,868,525	+				+1.2
3,868,525	+				+1.5
3,868,525	+				+2.4
3,868,533	-				-0.4
3,868,533	-				+0.8
3,868,533	-				+0.3
3,868,533	-				+0.7
3,868,538	+				+2.1
3,868,540	-				+0.5
3,868,541	-				+0.7
3,868,543	+				+1.9
3,868,543	+				+3.2
3,868,543	+				+1.6
3,868,543	+				+1.5
3,868,543	+				+2.0
3,868,543	+				+2.3
3,868,543	+				+1.7
3,868,543	+				+1.9
3,868,551	-				+1.5
3,868,551	-				-0.1
3,868,551	-				+0.7
3,868,551	-				+0.9
3,868,578	-				+1.3
3,868,599	+				+2.3
3,868,613	+				+0.6
3,868,615	+				+1.9
3,868,621	-				+0.7
3,868,684	+				+0.6
3,868,692	-				+2.7
3,868,704	+				+1.1
3,868,742	+		CCNA_03700	0.11	+0.7
3,868,774	+		CCNA_03700	0.18	+0.9
3,868,806	+		CCNA_03700	0.26	-0.6
3,868,814	-		CCNA_03700	0.28	+1.6
3,868,883	+		CCNA_03700	0.44	-0.8
3,869,035	-		CCNA_03700	0.80	+1.2
3,869,060	-		CCNA_03700	0.86	+1.3
3,869,064	-		CCNA_03700	0.87	+0.9
3,869,070	+		CCNA_03700	0.89	+0.8
3,869,116	+				+0.4
3,869,124	-				+2.1
3,869,128	+				-1.7
3,869,143	-				+3.1
3,869,145	+				-1.3
3,869,151	+				-0.1
3,869,181	-				+1.7
3,869,192	-				+3.0
3,869,192	-				+2.9
3,869,244	+		CCNA_03701	0.16	+1.4
3,869,277	+		CCNA_03701	0.27	-1.0
3,869,319	+		CCNA_03701	0.42	-0.7
3,869,350	+		CCNA_03701	0.52	+0.7
3,869,473	+				-0.0
3,869,473	+				-0.0
3,869,473	+				-0.4
3,869,473	+				+0.5
3,869,481	-				+3.6
3,869,481	-				+2.8
3,869,481	-				+2.5