Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03691

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,855,987	-				+0.3
3,856,022	-				-0.4
3,856,036	+				+2.0
3,856,074	+				-2.0
3,856,114	+				+1.4
3,856,122	-				+0.8
3,856,123	+				-1.0
3,856,229	+		CCNA_03690	0.19	+4.3
3,856,242	-		CCNA_03690	0.21	+2.1
3,856,247	-		CCNA_03690	0.22	+1.5
3,856,249	+		CCNA_03690	0.22	-0.2
3,856,257	-		CCNA_03690	0.23	-0.1
3,856,261	+		CCNA_03690	0.24	-1.1
3,856,261	+		CCNA_03690	0.24	-1.5
3,856,278	-		CCNA_03690	0.26	+0.7
3,856,341	+		CCNA_03690	0.35	-0.4
3,856,427	-		CCNA_03690	0.47	-0.2
3,856,427	-		CCNA_03690	0.47	+0.8
3,856,439	+		CCNA_03690	0.49	-1.5
3,856,444	+		CCNA_03690	0.50	-0.0
3,856,444	+		CCNA_03690	0.50	+0.1
3,856,452	-		CCNA_03690	0.51	+0.7
3,856,452	-		CCNA_03690	0.51	-1.1
3,856,452	-		CCNA_03690	0.51	-0.7
3,856,452	-		CCNA_03690	0.51	+1.3
3,856,452	-		CCNA_03690	0.51	+2.9
3,856,452	-		CCNA_03690	0.51	-0.1
3,856,452	-		CCNA_03690	0.51	+0.4
3,856,452	-		CCNA_03690	0.51	+0.8
3,856,463	-		CCNA_03690	0.52	+1.0
3,856,539	+		CCNA_03690	0.63	-1.3
3,856,547	-		CCNA_03690	0.64	+0.5
3,856,595	+		CCNA_03690	0.71	-1.1
3,856,603	-		CCNA_03690	0.72	-0.2
3,856,664	+		CCNA_03690	0.81	-0.4
3,856,685	+		CCNA_03690	0.84	-0.2
3,856,693	-		CCNA_03690	0.85	-0.2
3,856,712	+		CCNA_03690	0.88	+0.9
3,856,714	+		CCNA_03690	0.88	-0.8
3,856,720	-		CCNA_03690	0.89	-0.2
3,856,723	+		CCNA_03690	0.89	-1.0
3,856,725	+				+2.9
3,856,725	+		CCNA_03690	0.90	-3.3
3,856,736	+				-2.7
3,856,800	-				-0.8
3,856,800	-				+0.4
3,856,825	-				+0.7
3,856,870	+				+0.3
3,856,882	+				+0.1
3,856,890	-				-1.0
3,856,890	-				+0.2
3,856,890	-				+1.5
3,856,890	-				+0.4
3,856,892	+				-2.0
3,856,892	+				+1.0
3,856,900	-				+1.1
3,856,900	-				+1.1
3,856,902	+				-0.2
3,856,910	-				-0.9
3,856,910	-				+0.4
3,856,923	+				+0.8
3,856,925	+				+0.5
3,856,945	+				-0.4
3,856,968	-				+1.1
3,857,061	+		CCNA_03691	0.11	+0.1
3,857,071	+		CCNA_03691	0.12	+0.5
3,857,083	+		CCNA_03691	0.14	+2.3
3,857,093	+		CCNA_03691	0.15	+0.4
3,857,115	+		CCNA_03691	0.17	-1.5
3,857,123	-		CCNA_03691	0.18	+2.9
3,857,123	-		CCNA_03691	0.18	+2.8
3,857,125	+		CCNA_03691	0.18	-0.6
3,857,125	+		CCNA_03691	0.18	+1.0
3,857,125	+		CCNA_03691	0.18	+1.1
3,857,133	-		CCNA_03691	0.19	+2.5
3,857,140	-		CCNA_03691	0.20	+3.2
3,857,140	-		CCNA_03691	0.20	+3.2
3,857,152	+		CCNA_03691	0.21	-0.5
3,857,157	+		CCNA_03691	0.22	+0.4
3,857,160	-		CCNA_03691	0.22	+2.3
3,857,160	-		CCNA_03691	0.22	+2.5
3,857,160	-		CCNA_03691	0.22	+2.6
3,857,208	+		CCNA_03691	0.28	+0.9
3,857,208	+		CCNA_03691	0.28	-0.2
3,857,208	+		CCNA_03691	0.28	+1.1
3,857,208	+		CCNA_03691	0.28	+0.7
3,857,208	+		CCNA_03691	0.28	-0.3
3,857,216	-		CCNA_03691	0.29	+2.9
3,857,216	-		CCNA_03691	0.29	+2.7
3,857,216	-		CCNA_03691	0.29	+2.8
3,857,245	+		CCNA_03691	0.32	-1.3
3,857,283	-		CCNA_03691	0.36	+3.1
3,857,303	+		CCNA_03691	0.39	-0.0
3,857,356	-		CCNA_03691	0.45	+2.7
3,857,357	-		CCNA_03691	0.45	+1.9
3,857,364	-		CCNA_03691	0.46	+2.4
3,857,370	+		CCNA_03691	0.46	+0.4
3,857,384	+		CCNA_03691	0.48	+0.7
3,857,416	-		CCNA_03691	0.51	+3.3
3,857,459	+		CCNA_03691	0.56	+0.1
3,857,557	+		CCNA_03691	0.67	-1.8
3,857,560	-		CCNA_03691	0.68	+2.2
3,857,567	+		CCNA_03691	0.69	-0.4
3,857,570	-		CCNA_03691	0.69	+1.8
3,857,578	+		CCNA_03691	0.70	+0.5
3,857,584	+		CCNA_03691	0.71	+0.8
3,857,586	-		CCNA_03691	0.71	+1.5
3,857,593	-		CCNA_03691	0.72	+2.1
3,857,593	-		CCNA_03691	0.72	+2.1
3,857,627	+		CCNA_03691	0.75	+3.7
3,857,627	+		CCNA_03691	0.75	+0.4
3,857,627	+		CCNA_03691	0.75	+0.8
3,857,627	+		CCNA_03691	0.75	-1.4
3,857,635	-		CCNA_03691	0.76	+3.1
3,857,637	-		CCNA_03691	0.77	+2.4
3,857,644	+				+1.1
3,857,652	-		CCNA_03691	0.78	+2.0
3,857,654	+		CCNA_03691	0.78	+0.5
3,857,662	-		CCNA_03691	0.79	+2.4
3,857,662	-		CCNA_03691	0.79	+2.4
3,857,664	+		CCNA_03691	0.80	+1.1
3,857,664	+		CCNA_03691	0.80	-0.1
3,857,664	+		CCNA_03691	0.80	+1.3
3,857,664	+		CCNA_03691	0.80	-0.5
3,857,678	+		CCNA_03691	0.81	-0.5
3,857,681	-		CCNA_03691	0.82	+3.1
3,857,683	+		CCNA_03691	0.82	-0.5
3,857,683	+		CCNA_03691	0.82	+1.5
3,857,683	+		CCNA_03691	0.82	+0.1
3,857,683	+		CCNA_03691	0.82	+0.1
3,857,683	+		CCNA_03691	0.82	-0.7
3,857,683	+		CCNA_03691	0.82	+0.4
3,857,683	+		CCNA_03691	0.82	-0.1
3,857,683	-		CCNA_03691	0.82	+2.7
3,857,685	+		CCNA_03691	0.82	-0.3
3,857,685	+		CCNA_03691	0.82	-1.7
3,857,686	-		CCNA_03691	0.82	+2.5
3,857,691	-		CCNA_03691	0.83	+3.3
3,857,691	-		CCNA_03691	0.83	+3.3
3,857,691	-		CCNA_03691	0.83	+3.6
3,857,691	-		CCNA_03691	0.83	+2.7
3,857,693	+		CCNA_03691	0.83	-2.7
3,857,693	+		CCNA_03691	0.83	+0.2
3,857,693	+		CCNA_03691	0.83	-0.1
3,857,700	+		CCNA_03691	0.84	-0.7
3,857,700	+		CCNA_03691	0.84	-2.0
3,857,701	-		CCNA_03691	0.84	+2.3
3,857,702	+		CCNA_03691	0.84	-0.9
3,857,707	+		CCNA_03691	0.85	-0.3
3,857,708	-		CCNA_03691	0.85	+2.5
3,857,726	+		CCNA_03691	0.87	+0.9
3,857,726	+		CCNA_03691	0.87	+0.3
3,857,726	+		CCNA_03691	0.87	+0.4
3,857,726	+		CCNA_03691	0.87	-2.2
3,857,726	+		CCNA_03691	0.87	+0.9
3,857,726	+		CCNA_03691	0.87	-1.9
3,857,726	+		CCNA_03691	0.87	+1.5
3,857,734	-		CCNA_03691	0.88	+1.5
3,857,734	-		CCNA_03691	0.88	+1.2
3,857,734	-		CCNA_03691	0.88	+2.0
3,857,734	-		CCNA_03691	0.88	+1.4
3,857,734	-		CCNA_03691	0.88	+2.2
3,857,741	+		CCNA_03691	0.88	-2.4
3,857,782	-				+0.5
3,857,783	-				+1.9
3,857,832	+				-0.5
3,857,861	+				-0.1
3,857,885	+				-0.8
3,857,927	+				-1.1
3,857,934	-				+0.5
3,857,934	-				+0.2
3,857,940	+				+0.4
3,857,955	-		CCNA_03692	0.11	+0.3
3,858,006	+				+1.1
3,858,006	+		CCNA_03692	0.16	-0.0
3,858,006	+		CCNA_03692	0.16	-0.9
3,858,006	+		CCNA_03692	0.16	+0.1
3,858,006	+		CCNA_03692	0.16	-0.0
3,858,006	+		CCNA_03692	0.16	-0.7
3,858,006	+		CCNA_03692	0.16	-1.5
3,858,006	+		CCNA_03692	0.16	-0.1
3,858,006	+		CCNA_03692	0.16	-1.1
3,858,006	+		CCNA_03692	0.16	+0.7
3,858,014	-		CCNA_03692	0.17	-0.7
3,858,014	-		CCNA_03692	0.17	-1.3
3,858,014	-		CCNA_03692	0.17	-0.7
3,858,014	-		CCNA_03692	0.17	-0.5
3,858,014	-		CCNA_03692	0.17	-1.3
3,858,014	-		CCNA_03692	0.17	-1.3
3,858,014	-		CCNA_03692	0.17	-1.0
3,858,014	-		CCNA_03692	0.17	-1.7
3,858,014	-		CCNA_03692	0.17	+1.0
3,858,014	-		CCNA_03692	0.17	+0.3
3,858,014	-		CCNA_03692	0.17	-0.0
3,858,023	+		CCNA_03692	0.17	-2.2
3,858,031	+		CCNA_03692	0.18	+1.9
3,858,034	+		CCNA_03692	0.18	-0.1
3,858,052	+		CCNA_03692	0.20	-1.5
3,858,098	-		CCNA_03692	0.24	-0.5
3,858,107	-		CCNA_03692	0.25	+0.7
3,858,162	+		CCNA_03692	0.30	+0.3
3,858,170	-		CCNA_03692	0.31	-0.5
3,858,213	+		CCNA_03692	0.35	+0.9
3,858,214	-		CCNA_03692	0.35	-0.5
3,858,223	+		CCNA_03692	0.36	-1.3
3,858,223	+		CCNA_03692	0.36	-0.3
3,858,238	+		CCNA_03692	0.37	-0.8
3,858,238	+		CCNA_03692	0.37	-1.5
3,858,238	+		CCNA_03692	0.37	+0.2
3,858,240	+		CCNA_03692	0.37	+2.4
3,858,240	+		CCNA_03692	0.37	-0.6
3,858,240	+		CCNA_03692	0.37	-0.7
3,858,246	-		CCNA_03692	0.38	-1.3
3,858,253	-		CCNA_03692	0.39	-0.1
3,858,253	-		CCNA_03692	0.39	+0.7
3,858,253	-		CCNA_03692	0.39	-0.8
3,858,262	+		CCNA_03692	0.39	-0.7
3,858,289	-		CCNA_03692	0.42	+0.4
3,858,293	-		CCNA_03692	0.42	+1.7
3,858,294	-		CCNA_03692	0.42	+1.2
3,858,316	-		CCNA_03692	0.44	-0.8
3,858,355	+		CCNA_03692	0.48	-0.2
3,858,366	+		CCNA_03692	0.49	-1.4
3,858,371	+		CCNA_03692	0.49	+0.2
3,858,427	+		CCNA_03692	0.55	-1.4
3,858,427	+		CCNA_03692	0.55	+0.7
3,858,427	+		CCNA_03692	0.55	-0.6
3,858,435	-		CCNA_03692	0.55	-0.7
3,858,435	-		CCNA_03692	0.55	+0.3
3,858,444	+		CCNA_03692	0.56	-0.6
3,858,449	+		CCNA_03692	0.57	+0.7
3,858,452	-		CCNA_03692	0.57	+0.9
3,858,511	+		CCNA_03692	0.62	+1.3
3,858,524	+		CCNA_03692	0.64	-1.1
3,858,530	+		CCNA_03692	0.64	-0.6
3,858,579	-		CCNA_03692	0.69	+0.5
3,858,584	+		CCNA_03692	0.69	-0.0
3,858,591	+		CCNA_03692	0.70	-0.3
3,858,599	-		CCNA_03692	0.71	-0.4
3,858,614	+		CCNA_03692	0.72	+2.8
3,858,619	-		CCNA_03692	0.72	-0.1
3,858,625	+		CCNA_03692	0.73	+2.5
3,858,633	+		CCNA_03692	0.74	+0.4
3,858,640	+		CCNA_03692	0.74	+1.0
3,858,641	-		CCNA_03692	0.74	-1.3
3,858,651	+		CCNA_03692	0.75	+0.7
3,858,674	-		CCNA_03692	0.77	-0.1
3,858,674	-		CCNA_03692	0.77	-1.2
3,858,674	-		CCNA_03692	0.77	-0.4
3,858,683	+		CCNA_03692	0.78	+1.2
3,858,686	-		CCNA_03692	0.79	-0.9
3,858,691	-		CCNA_03692	0.79	+0.9
3,858,691	-		CCNA_03692	0.79	+0.6
3,858,704	-		CCNA_03692	0.80	-0.2
3,858,713	-		CCNA_03692	0.81	-0.9
3,858,749	+		CCNA_03692	0.84	-1.7
3,858,749	+		CCNA_03692	0.84	+0.1
3,858,757	+		CCNA_03692	0.85	+0.8
3,858,757	+		CCNA_03692	0.85	+1.0
3,858,757	-		CCNA_03692	0.85	-0.7
3,858,757	-		CCNA_03692	0.85	-1.1
3,858,772	+		CCNA_03692	0.87	+1.1
3,858,805	+		CCNA_03692	0.90	+0.4
3,858,805	+		CCNA_03692	0.90	+0.5
3,858,805	+		CCNA_03692	0.90	-0.5
3,858,805	+		CCNA_03692	0.90	+0.8
3,858,805	+		CCNA_03692	0.90	+0.2
3,858,805	+		CCNA_03692	0.90	+0.3
3,858,805	+		CCNA_03692	0.90	+1.0
3,858,805	+		CCNA_03692	0.90	-0.8
3,858,805	+		CCNA_03692	0.90	-1.5
3,858,805	+		CCNA_03692	0.90	-0.5
3,858,805	+		CCNA_03692	0.90	-0.2
3,858,813	-				+1.0
3,858,813	-				-0.2
3,858,813	-				-1.5
3,858,813	-				-0.4
3,858,813	-				-0.5
3,858,813	-				+1.1
3,858,813	-				-0.2
3,858,813	-				+1.4
3,858,813	-				+2.1
3,858,813	-				-0.2
3,858,832	-				-0.3