Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03689

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,853,905	-		CCNA_03687	0.62	-0.5
3,853,906	-		CCNA_03687	0.62	-0.4
3,853,915	-		CCNA_03687	0.63	+1.7
3,853,915	-		CCNA_03687	0.63	+1.4
3,853,926	-		CCNA_03687	0.64	+0.7
3,853,935	+		CCNA_03687	0.66	+0.6
3,853,944	+		CCNA_03687	0.67	+0.5
3,853,957	-		CCNA_03687	0.68	+1.2
3,853,959	+		CCNA_03687	0.68	+0.4
3,853,959	+		CCNA_03687	0.68	-2.4
3,853,959	+		CCNA_03687	0.68	-1.3
3,853,959	+		CCNA_03687	0.68	-1.1
3,853,959	+		CCNA_03687	0.68	+1.3
3,853,959	+		CCNA_03687	0.68	-0.7
3,853,959	+		CCNA_03687	0.68	-0.6
3,853,959	+		CCNA_03687	0.68	+1.1
3,853,967	-		CCNA_03687	0.69	-1.3
3,853,967	-		CCNA_03687	0.69	+2.1
3,853,967	-		CCNA_03687	0.69	-0.5
3,853,967	-		CCNA_03687	0.69	-1.0
3,853,967	-		CCNA_03687	0.69	-1.7
3,853,967	-		CCNA_03687	0.69	+0.1
3,853,967	-		CCNA_03687	0.69	-0.1
3,853,967	-		CCNA_03687	0.69	+0.4
3,853,994	+		CCNA_03687	0.73	-0.8
3,854,001	+		CCNA_03687	0.74	-0.1
3,854,001	+		CCNA_03687	0.74	+0.6
3,854,001	+		CCNA_03687	0.74	-0.4
3,854,009	-		CCNA_03687	0.75	+0.5
3,854,009	-		CCNA_03687	0.75	+0.5
3,854,034	-		CCNA_03687	0.78	+4.2
3,854,046	+		CCNA_03687	0.79	+0.8
3,854,046	+		CCNA_03687	0.79	+0.2
3,854,054	-		CCNA_03687	0.80	+0.9
3,854,070	-		CCNA_03687	0.82	+0.9
3,854,137	-				-1.2
3,854,150	-				-1.6
3,854,168	-				-2.0
3,854,253	+				+0.1
3,854,253	+				-1.7
3,854,253	+				-0.8
3,854,268	+				-1.8
3,854,276	-				-0.9
3,854,286	-				+3.7
3,854,319	-				+2.3
3,854,319	-				+2.0
3,854,325	+				+0.3
3,854,325	+				+0.2
3,854,333	-				+2.5
3,854,333	-				+1.9
3,854,354	-		CCNA_03688	0.13	+1.5
3,854,354	-		CCNA_03688	0.13	+2.3
3,854,354	-		CCNA_03688	0.13	+2.1
3,854,354	-		CCNA_03688	0.13	+2.2
3,854,355	-		CCNA_03688	0.13	+1.9
3,854,356	+		CCNA_03688	0.14	+0.6
3,854,367	-		CCNA_03688	0.16	+3.0
3,854,468	-		CCNA_03688	0.37	+3.2
3,854,468	-		CCNA_03688	0.37	+2.0
3,854,469	-		CCNA_03688	0.37	+2.2
3,854,485	+		CCNA_03688	0.41	+0.7
3,854,488	-		CCNA_03688	0.41	+2.7
3,854,493	-		CCNA_03688	0.42	+1.5
3,854,523	-		CCNA_03688	0.49	+1.2
3,854,564	+		CCNA_03688	0.57	+0.1
3,854,564	+		CCNA_03688	0.57	+1.6
3,854,588	+		CCNA_03688	0.62	+0.2
3,854,621	-		CCNA_03688	0.69	+2.1
3,854,658	-		CCNA_03688	0.77	+2.0
3,854,678	+		CCNA_03688	0.81	+1.9
3,854,806	+				+1.6
3,854,934	+				+1.9
3,854,934	+				+2.3
3,854,934	+				+2.1
3,854,942	-				-0.8
3,854,942	-				-0.6
3,854,942	-				-0.1
3,854,971	+				+2.2
3,854,974	-				-0.0
3,855,029	+		CCNA_03689	0.13	+2.7
3,855,033	+		CCNA_03689	0.13	+2.8
3,855,036	-		CCNA_03689	0.14	-1.1
3,855,074	+		CCNA_03689	0.17	+3.1
3,855,074	+		CCNA_03689	0.17	+3.2
3,855,103	+		CCNA_03689	0.20	+3.1
3,855,103	+		CCNA_03689	0.20	+3.4
3,855,103	+		CCNA_03689	0.20	+3.3
3,855,103	+		CCNA_03689	0.20	+2.8
3,855,111	-		CCNA_03689	0.20	+0.3
3,855,118	-		CCNA_03689	0.21	-2.0
3,855,155	+				+3.9
3,855,155	+		CCNA_03689	0.24	+3.8
3,855,163	-		CCNA_03689	0.25	+0.3
3,855,205	+		CCNA_03689	0.29	+3.4
3,855,205	+		CCNA_03689	0.29	+3.1
3,855,205	+		CCNA_03689	0.29	+2.9
3,855,224	+		CCNA_03689	0.30	+3.7
3,855,305	+		CCNA_03689	0.38	+3.3
3,855,328	-		CCNA_03689	0.40	-1.3
3,855,364	-		CCNA_03689	0.43	+0.5
3,855,369	-		CCNA_03689	0.43	-0.8
3,855,383	+		CCNA_03689	0.45	+3.7
3,855,391	-		CCNA_03689	0.45	-0.4
3,855,409	-		CCNA_03689	0.47	+0.5
3,855,480	+		CCNA_03689	0.53	+3.4
3,855,518	-		CCNA_03689	0.57	+0.3
3,855,545	+		CCNA_03689	0.59	+3.2
3,855,571	+		CCNA_03689	0.62	+3.0
3,855,571	+		CCNA_03689	0.62	+3.4
3,855,571	+		CCNA_03689	0.62	+3.0
3,855,579	-		CCNA_03689	0.62	-0.6
3,855,599	+		CCNA_03689	0.64	+3.7
3,855,599	+		CCNA_03689	0.64	+3.3
3,855,634	-		CCNA_03689	0.67	+0.2
3,855,646	+				+3.9
3,855,646	+		CCNA_03689	0.68	+2.8
3,855,646	+		CCNA_03689	0.68	+3.5
3,855,654	-		CCNA_03689	0.69	+0.9
3,855,654	-		CCNA_03689	0.69	-1.0
3,855,663	-		CCNA_03689	0.70	+0.2
3,855,666	+		CCNA_03689	0.70	+3.0
3,855,700	-		CCNA_03689	0.73	-0.8
3,855,705	+		CCNA_03689	0.74	+3.2
3,855,705	+		CCNA_03689	0.74	+3.0
3,855,705	+		CCNA_03689	0.74	+3.4
3,855,729	+		CCNA_03689	0.76	+2.6
3,855,737	+		CCNA_03689	0.77	+4.2
3,855,737	-		CCNA_03689	0.77	-0.3
3,855,743	+		CCNA_03689	0.77	+4.3
3,855,764	+		CCNA_03689	0.79	+4.0
3,855,764	+		CCNA_03689	0.79	+3.7
3,855,764	+		CCNA_03689	0.79	+4.0
3,855,764	+		CCNA_03689	0.79	+3.8
3,855,764	+		CCNA_03689	0.79	+4.1
3,855,764	+		CCNA_03689	0.79	+3.6
3,855,764	+		CCNA_03689	0.79	+4.0
3,855,764	+		CCNA_03689	0.79	+4.2
3,855,764	+		CCNA_03689	0.79	+4.1
3,855,764	+		CCNA_03689	0.79	+4.1
3,855,764	+		CCNA_03689	0.79	+4.1
3,855,764	+		CCNA_03689	0.79	+4.1
3,855,764	+		CCNA_03689	0.79	+3.9
3,855,772	-		CCNA_03689	0.80	-1.0
3,855,772	-		CCNA_03689	0.80	-0.8
3,855,792	+		CCNA_03689	0.81	+4.1
3,855,818	+		CCNA_03689	0.84	+4.2
3,855,818	+		CCNA_03689	0.84	+4.1
3,855,818	-		CCNA_03689	0.84	+1.2
3,855,826	-		CCNA_03689	0.85	+0.3
3,855,833	+		CCNA_03689	0.85	+3.5
3,855,833	+		CCNA_03689	0.85	+3.9
3,855,833	+		CCNA_03689	0.85	+4.0
3,855,840	+		CCNA_03689	0.86	+3.5
3,855,841	-		CCNA_03689	0.86	-0.5
3,855,844	-		CCNA_03689	0.86	-0.5
3,855,854	-		CCNA_03689	0.87	+0.5
3,855,866	+		CCNA_03689	0.88	+3.9
3,855,883	+		CCNA_03689	0.90	+3.8
3,855,884	-		CCNA_03689	0.90	+2.5
3,855,893	+				+4.2
3,855,914	+				+4.4
3,855,922	-				-0.8
3,855,958	+				+4.0
3,855,958	+				+2.9
3,855,987	-				+0.3
3,856,022	-				-0.4
3,856,036	+				+2.0
3,856,074	+				-2.0
3,856,114	+				+1.4
3,856,122	-				+0.8
3,856,123	+				-1.0
3,856,229	+		CCNA_03690	0.19	+4.3
3,856,242	-		CCNA_03690	0.21	+2.1
3,856,247	-		CCNA_03690	0.22	+1.5
3,856,249	+		CCNA_03690	0.22	-0.2
3,856,257	-		CCNA_03690	0.23	-0.1
3,856,261	+		CCNA_03690	0.24	-1.1
3,856,261	+		CCNA_03690	0.24	-1.5
3,856,278	-		CCNA_03690	0.26	+0.7
3,856,341	+		CCNA_03690	0.35	-0.4
3,856,427	-		CCNA_03690	0.47	-0.2
3,856,427	-		CCNA_03690	0.47	+0.8
3,856,439	+		CCNA_03690	0.49	-1.5
3,856,444	+		CCNA_03690	0.50	-0.0
3,856,444	+		CCNA_03690	0.50	+0.1
3,856,452	-		CCNA_03690	0.51	+0.7
3,856,452	-		CCNA_03690	0.51	-1.1
3,856,452	-		CCNA_03690	0.51	-0.7
3,856,452	-		CCNA_03690	0.51	+1.3
3,856,452	-		CCNA_03690	0.51	+2.9
3,856,452	-		CCNA_03690	0.51	-0.1
3,856,452	-		CCNA_03690	0.51	+0.4
3,856,452	-		CCNA_03690	0.51	+0.8
3,856,463	-		CCNA_03690	0.52	+1.0
3,856,539	+		CCNA_03690	0.63	-1.3
3,856,547	-		CCNA_03690	0.64	+0.5
3,856,595	+		CCNA_03690	0.71	-1.1
3,856,603	-		CCNA_03690	0.72	-0.2
3,856,664	+		CCNA_03690	0.81	-0.4
3,856,685	+		CCNA_03690	0.84	-0.2
3,856,693	-		CCNA_03690	0.85	-0.2
3,856,712	+		CCNA_03690	0.88	+0.9
3,856,714	+		CCNA_03690	0.88	-0.8
3,856,720	-		CCNA_03690	0.89	-0.2
3,856,723	+		CCNA_03690	0.89	-1.0
3,856,725	+				+2.9
3,856,725	+		CCNA_03690	0.90	-3.3
3,856,736	+				-2.7
3,856,800	-				-0.8
3,856,800	-				+0.4
3,856,825	-				+0.7
3,856,870	+				+0.3
3,856,882	+				+0.1
3,856,890	-				-1.0
3,856,890	-				+0.2
3,856,890	-				+1.5
3,856,890	-				+0.4
3,856,892	+				-2.0
3,856,892	+				+1.0
3,856,900	-				+1.1
3,856,900	-				+1.1
3,856,902	+				-0.2
3,856,910	-				-0.9
3,856,910	-				+0.4
3,856,923	+				+0.8
3,856,925	+				+0.5
3,856,945	+				-0.4
3,856,968	-				+1.1