Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03679

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,837,773	+				-1.2
3,837,774	-				-0.7
3,837,841	-				-0.7
3,837,885	+				+0.4
3,837,915	+				+0.7
3,837,925	+				+0.7
3,837,933	-				-0.8
3,837,933	-				+0.5
3,837,972	+				-1.9
3,837,972	+				+0.1
3,837,976	-				-0.7
3,838,005	+		CCNA_03678	0.12	-2.0
3,838,011	+		CCNA_03678	0.13	-0.3
3,838,050	+		CCNA_03678	0.19	+2.0
3,838,104	+		CCNA_03678	0.28	-1.6
3,838,109	+		CCNA_03678	0.29	-0.5
3,838,109	+		CCNA_03678	0.29	+1.5
3,838,142	-		CCNA_03678	0.34	+0.7
3,838,216	+		CCNA_03678	0.46	+3.9
3,838,224	-		CCNA_03678	0.47	+0.5
3,838,260	-		CCNA_03678	0.53	-0.9
3,838,276	+		CCNA_03678	0.56	-0.3
3,838,308	-		CCNA_03678	0.61	+0.9
3,838,331	+		CCNA_03678	0.64	-1.2
3,838,345	-		CCNA_03678	0.67	+0.1
3,838,384	+		CCNA_03678	0.73	-0.2
3,838,384	+		CCNA_03678	0.73	+1.5
3,838,392	-		CCNA_03678	0.74	+0.9
3,838,402	-		CCNA_03678	0.76	-0.5
3,838,423	-		CCNA_03678	0.79	-1.4
3,838,425	-		CCNA_03678	0.79	-0.5
3,838,430	-		CCNA_03678	0.80	-1.1
3,838,430	-		CCNA_03678	0.80	-3.0
3,838,483	+		CCNA_03678	0.89	+0.1
3,838,483	+		CCNA_03678	0.89	+2.1
3,838,509	-				-1.5
3,838,554	-				+1.0
3,838,632	+				-1.5
3,838,664	+				-1.0
3,838,685	-				+2.2
3,838,741	-				+1.1
3,838,746	-				-0.1
3,838,796	+		CCNA_03679	0.14	+0.1
3,838,796	+		CCNA_03679	0.14	+0.3
3,838,804	-		CCNA_03679	0.16	+0.1
3,838,813	+		CCNA_03679	0.18	-1.8
3,838,824	-		CCNA_03679	0.21	+1.2
3,838,830	+		CCNA_03679	0.22	+1.5
3,838,830	+		CCNA_03679	0.22	-0.6
3,838,830	+		CCNA_03679	0.22	-1.4
3,838,838	-		CCNA_03679	0.24	+0.9
3,838,838	-		CCNA_03679	0.24	+1.1
3,838,838	-		CCNA_03679	0.24	+0.0
3,838,838	-		CCNA_03679	0.24	+1.9
3,838,838	-		CCNA_03679	0.24	+1.2
3,838,848	-		CCNA_03679	0.26	+1.1
3,838,851	+		CCNA_03679	0.27	+0.2
3,838,851	+		CCNA_03679	0.27	-1.0
3,838,858	-		CCNA_03679	0.28	+0.9
3,838,859	-		CCNA_03679	0.29	+0.2
3,838,859	-		CCNA_03679	0.29	-0.8
3,838,865	-		CCNA_03679	0.30	-1.1
3,838,867	+		CCNA_03679	0.31	+0.3
3,838,875	-		CCNA_03679	0.32	+1.5
3,838,907	-		CCNA_03679	0.40	+0.6
3,838,954	-		CCNA_03679	0.51	+2.3
3,838,959	-		CCNA_03679	0.52	+1.6
3,839,039	-		CCNA_03679	0.71	+2.9
3,839,041	-		CCNA_03679	0.71	+0.6
3,839,080	+		CCNA_03679	0.80	-1.3
3,839,152	-				+1.4
3,839,200	+				+0.9
3,839,200	+				-1.1
3,839,210	+				+0.1
3,839,218	-				+3.1
3,839,236	+				-0.5
3,839,244	-				+3.2
3,839,244	-				+3.3
3,839,267	-				+2.5
3,839,269	+				+0.7
3,839,269	+				-0.8
3,839,274	+				+0.8
3,839,345	+				-1.3
3,839,353	-				+2.7
3,839,353	-				+2.5
3,839,353	-				+2.7
3,839,367	-				+3.3
3,839,400	-				+2.9
3,839,407	-				+3.5
3,839,450	+				+0.9
3,839,480	+				+2.9
3,839,503	-				+2.6
3,839,521	-		CCNA_03680	0.10	+2.1
3,839,606	+		CCNA_03680	0.12	+0.2
3,839,614	-		CCNA_03680	0.13	+1.9
3,839,616	-		CCNA_03680	0.13	+2.5
3,839,638	-		CCNA_03680	0.13	+2.1
3,839,666	+		CCNA_03680	0.14	+2.0
3,839,666	+		CCNA_03680	0.14	-1.3
3,839,668	-		CCNA_03680	0.14	+2.1
3,839,683	+		CCNA_03680	0.15	+0.1
3,839,714	+		CCNA_03680	0.15	-1.5
3,839,714	+		CCNA_03680	0.15	-0.5
3,839,725	+		CCNA_03680	0.16	+0.0
3,839,725	+		CCNA_03680	0.16	-0.5
3,839,733	-		CCNA_03680	0.16	+2.3
3,839,740	-		CCNA_03680	0.16	+2.4
3,839,783	+		CCNA_03680	0.17	+1.2
3,839,800	+		CCNA_03680	0.18	+0.5
3,839,826	+		CCNA_03680	0.19	-0.3
3,839,826	+		CCNA_03680	0.19	+0.5
3,839,826	+		CCNA_03680	0.19	-0.3
3,839,828	+		CCNA_03680	0.19	+1.3
3,839,828	+		CCNA_03680	0.19	-0.5
3,839,833	+		CCNA_03680	0.19	+1.5
3,839,834	-		CCNA_03680	0.19	+2.2
3,839,855	+		CCNA_03680	0.19	-1.5
3,839,863	-		CCNA_03680	0.20	+0.8
3,839,883	+		CCNA_03680	0.20	-2.1
3,839,888	+		CCNA_03680	0.20	+1.4
3,839,893	+		CCNA_03680	0.20	-0.5
3,839,896	-		CCNA_03680	0.20	+2.4
3,839,901	-		CCNA_03680	0.21	+1.6
3,839,917	-		CCNA_03680	0.21	+1.9
3,839,924	+		CCNA_03680	0.21	-1.2
3,839,924	+		CCNA_03680	0.21	+0.9
3,839,932	-		CCNA_03680	0.21	+1.7
3,839,994	+		CCNA_03680	0.23	-0.9
3,840,015	+		CCNA_03680	0.24	-0.8
3,840,023	-		CCNA_03680	0.24	+1.5
3,840,038	+		CCNA_03680	0.24	+0.3
3,840,038	+		CCNA_03680	0.24	-1.2
3,840,072	+		CCNA_03680	0.25	-0.1
3,840,075	+		CCNA_03680	0.25	+1.1
3,840,080	-		CCNA_03680	0.26	+1.4
3,840,083	-		CCNA_03680	0.26	+1.4
3,840,104	+		CCNA_03680	0.26	+2.1
3,840,112	-		CCNA_03680	0.27	+2.6
3,840,112	-		CCNA_03680	0.27	+2.8
3,840,122	+		CCNA_03680	0.27	+0.1
3,840,122	+		CCNA_03680	0.27	+0.0
3,840,149	-		CCNA_03680	0.28	+0.8
3,840,157	-		CCNA_03680	0.28	+1.7