Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03672

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,831,576	-		CCNA_03670	0.83	-1.2
3,831,592	+		CCNA_03670	0.85	-1.2
3,831,592	+		CCNA_03670	0.85	-1.9
3,831,597	+		CCNA_03670	0.86	+2.5
3,831,597	+		CCNA_03670	0.86	-0.5
3,831,600	-		CCNA_03670	0.86	-0.4
3,831,605	-		CCNA_03670	0.87	-0.6
3,831,623	-		CCNA_03670	0.89	+0.0
3,831,625	+		CCNA_03670	0.89	-1.7
3,831,654	-				+1.1
3,831,670	-				-0.7
3,831,707	-				-0.8
3,831,710	+				+1.3
3,831,716	-				-0.1
3,831,808	+		CCNA_03671	0.12	+0.7
3,831,837	-		CCNA_03671	0.16	+1.4
3,831,847	-		CCNA_03671	0.17	-1.8
3,831,885	+		CCNA_03671	0.22	-1.0
3,831,885	+		CCNA_03671	0.22	-0.7
3,832,015	-		CCNA_03671	0.38	-1.1
3,832,021	+		CCNA_03671	0.39	-2.2
3,832,027	+		CCNA_03671	0.40	-1.5
3,832,027	+		CCNA_03671	0.40	-0.5
3,832,027	+		CCNA_03671	0.40	+0.1
3,832,027	+		CCNA_03671	0.40	-1.5
3,832,035	-		CCNA_03671	0.41	+0.9
3,832,035	-		CCNA_03671	0.41	-0.8
3,832,043	+		CCNA_03671	0.42	-0.5
3,832,068	+		CCNA_03671	0.45	+1.3
3,832,074	-		CCNA_03671	0.46	-1.3
3,832,077	+		CCNA_03671	0.46	+1.1
3,832,086	-		CCNA_03671	0.47	+1.3
3,832,105	+		CCNA_03671	0.50	-2.7
3,832,134	-		CCNA_03671	0.53	-1.5
3,832,135	+		CCNA_03671	0.53	+1.1
3,832,135	+		CCNA_03671	0.53	-0.9
3,832,136	+		CCNA_03671	0.53	+0.5
3,832,143	-		CCNA_03671	0.54	-1.6
3,832,146	+		CCNA_03671	0.55	+1.3
3,832,161	-		CCNA_03671	0.57	+0.3
3,832,183	-		CCNA_03671	0.59	-2.0
3,832,205	-		CCNA_03671	0.62	-1.2
3,832,208	+		CCNA_03671	0.63	-1.6
3,832,224	-		CCNA_03671	0.65	-0.1
3,832,251	-		CCNA_03671	0.68	-1.1
3,832,253	-		CCNA_03671	0.68	-0.4
3,832,253	-		CCNA_03671	0.68	-2.0
3,832,304	-		CCNA_03671	0.75	-0.0
3,832,341	-		CCNA_03671	0.79	+1.1
3,832,360	+		CCNA_03671	0.82	-3.0
3,832,372	-		CCNA_03671	0.83	-0.3
3,832,372	-		CCNA_03671	0.83	-2.6
3,832,393	+		CCNA_03671	0.86	-0.1
3,832,393	+		CCNA_03671	0.86	+0.4
3,832,401	-		CCNA_03671	0.87	+1.5
3,832,401	-		CCNA_03671	0.87	-1.5
3,832,445	-				+0.9
3,832,445	-				+0.4
3,832,445	-				+1.5
3,832,469	-				-0.8
3,832,562	-				+2.0
3,832,562	-				+1.3
3,832,565	+				+0.7
3,832,573	-				-1.8
3,832,578	-				-1.7
3,832,592	+				-0.9
3,832,604	-				-0.3
3,832,622	-		CCNA_03672	0.12	-2.2
3,832,641	-		CCNA_03672	0.15	-2.3
3,832,665	+		CCNA_03672	0.19	-0.8
3,832,665	+		CCNA_03672	0.19	-0.0
3,832,673	-		CCNA_03672	0.20	-2.4
3,832,673	-		CCNA_03672	0.20	-3.0
3,832,682	+		CCNA_03672	0.22	-0.9
3,832,706	+		CCNA_03672	0.26	+0.7
3,832,711	+		CCNA_03672	0.27	+0.3
3,832,724	-		CCNA_03672	0.29	-2.1
3,832,786	+		CCNA_03672	0.39	+1.1
3,832,805	-		CCNA_03672	0.42	-2.2
3,832,891	+		CCNA_03672	0.56	-0.1
3,832,921	-		CCNA_03672	0.60	+3.6
3,832,921	-		CCNA_03672	0.60	-1.1
3,832,965	-		CCNA_03672	0.67	-0.3
3,832,965	-		CCNA_03672	0.67	+1.9
3,832,980	-		CCNA_03672	0.70	-1.5
3,832,980	-		CCNA_03672	0.70	-2.8
3,832,997	+		CCNA_03672	0.73	-0.0
3,833,041	-		CCNA_03672	0.80	-0.7
3,833,047	+		CCNA_03672	0.81	+1.3
3,833,047	+		CCNA_03672	0.81	+1.5
3,833,047	+		CCNA_03672	0.81	-0.8
3,833,055	-		CCNA_03672	0.82	-0.8
3,833,055	-		CCNA_03672	0.82	-0.6
3,833,140	+				+0.3
3,833,143	-				-0.1
3,833,143	-				-1.0
3,833,143	-				-1.5
3,833,154	-				-1.3
3,833,161	+				-0.7
3,833,172	+				-2.8
3,833,180	-				+0.4
3,833,202	-				+0.5
3,833,221	+				-1.3
3,833,221	+				+0.7
3,833,221	+				-0.8
3,833,225	-				+0.7
3,833,229	-				+0.2
3,833,231	-				+1.5
3,833,238	+				-2.0
3,833,248	-				-1.9
3,833,320	+				+0.3
3,833,320	+				+0.9
3,833,328	-				-0.2
3,833,351	-				+0.2
3,833,370	+				-1.4
3,833,376	-				+3.0
3,833,376	-				+3.3
3,833,376	-				+3.0
3,833,378	-				+1.7
3,833,449	-		CCNA_03673	0.15	+1.5
3,833,477	+		CCNA_03673	0.22	-0.1
3,833,477	+		CCNA_03673	0.22	+0.4
3,833,477	+		CCNA_03673	0.22	-0.4
3,833,485	-		CCNA_03673	0.24	+1.6
3,833,485	-		CCNA_03673	0.24	+1.6
3,833,485	-		CCNA_03673	0.24	+2.2
3,833,543	+		CCNA_03673	0.39	+0.3
3,833,545	-		CCNA_03673	0.39	+0.8
3,833,547	+		CCNA_03673	0.40	-1.1
3,833,623	-		CCNA_03673	0.58	+1.5
3,833,625	+		CCNA_03673	0.59	-0.6
3,833,633	-		CCNA_03673	0.61	+1.9
3,833,633	-		CCNA_03673	0.61	+2.3
3,833,633	-		CCNA_03673	0.61	+1.6
3,833,633	-		CCNA_03673	0.61	+1.5
3,833,668	+		CCNA_03673	0.70	-0.8
3,833,680	-		CCNA_03673	0.73	+2.3
3,833,685	-		CCNA_03673	0.74	+1.8
3,833,756	+				-0.4
3,833,839	+		CCNA_03674	0.15	-0.2
3,833,840	+		CCNA_03674	0.16	-2.0
3,833,864	+		CCNA_03674	0.23	-1.2
3,833,872	-		CCNA_03674	0.25	+2.3
3,833,892	+		CCNA_03674	0.31	-2.3
3,833,892	+		CCNA_03674	0.31	+0.7
3,833,892	+		CCNA_03674	0.31	+0.1
3,833,892	+		CCNA_03674	0.31	+1.3
3,833,900	-		CCNA_03674	0.33	+2.4
3,833,900	-		CCNA_03674	0.33	+1.3
3,833,900	-		CCNA_03674	0.33	+2.7
3,833,900	-		CCNA_03674	0.33	+2.4
3,833,905	-		CCNA_03674	0.34	+2.2
3,833,916	-		CCNA_03674	0.38	+3.2
3,833,953	-		CCNA_03674	0.48	+3.0
3,833,953	-		CCNA_03674	0.48	+2.5
3,833,953	-		CCNA_03674	0.48	+1.5
3,833,959	+		CCNA_03674	0.50	-0.9
3,834,002	-		CCNA_03674	0.63	+1.9
3,834,048	-		CCNA_03674	0.76	+1.8
3,834,084	+		CCNA_03674	0.86	+0.1
3,834,084	+		CCNA_03674	0.86	+0.2
3,834,092	-		CCNA_03674	0.89	+0.5
3,834,092	-		CCNA_03674	0.89	+1.5
3,834,092	-		CCNA_03674	0.89	+1.2
3,834,092	-		CCNA_03674	0.89	+1.8
3,834,092	-		CCNA_03674	0.89	+1.5
3,834,092	-		CCNA_03674	0.89	+2.1
3,834,092	-		CCNA_03674	0.89	+0.2
3,834,092	-		CCNA_03674	0.89	-0.1
3,834,126	+				+0.5