Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03636

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
3,788,702	+		CCNA_03634	0.51	-0.1
3,788,702	+		CCNA_03634	0.51	-0.3
3,788,725	+		CCNA_03634	0.55	+1.0
3,788,733	-		CCNA_03634	0.57	-2.0
3,788,733	-		CCNA_03634	0.57	-0.9
3,788,738	-		CCNA_03634	0.57	-2.6
3,788,778	-		CCNA_03634	0.64	-1.1
3,788,793	-		CCNA_03634	0.67	-2.6
3,788,821	+		CCNA_03634	0.71	+0.2
3,788,821	+		CCNA_03634	0.71	+1.0
3,788,829	-		CCNA_03634	0.73	+0.6
3,788,829	-		CCNA_03634	0.73	-0.2
3,788,829	-		CCNA_03634	0.73	+0.0
3,788,923	+		CCNA_03634	0.89	-0.5
3,788,931	-				-0.3
3,788,933	-				+2.1
3,788,933	-				+0.9
3,788,946	+				-1.0
3,788,954	-				-0.1
3,788,954	-				-0.4
3,788,954	-				+0.5
3,788,954	-				+1.3
3,788,991	-				-0.4
3,788,993	+				+0.6
3,788,993	-				+0.3
3,789,027	+				-0.2
3,789,126	+				-0.1
3,789,126	+				-1.6
3,789,150	+		CCNA_03635	0.13	+0.9
3,789,429	+		CCNA_03635	0.87	+0.9
3,789,434	+		CCNA_03635	0.88	+1.2
3,789,446	+				+0.3
3,789,491	+				-0.8
3,789,504	+				-0.5
3,789,532	-				+0.8
3,789,579	+				+1.3
3,789,579	+				+0.1
3,789,587	-				+2.5
3,789,587	-				+2.4
3,789,587	-				+3.6
3,789,587	-				+1.9
3,789,587	-				+2.5
3,789,592	-				+1.8
3,789,597	-				+1.6
3,789,608	+				+1.4
3,789,608	+				+0.3
3,789,608	+				+0.3
3,789,628	-				+2.1
3,789,648	-				+1.9
3,789,648	-				+2.8
3,789,684	+				+1.5
3,789,686	+				+0.2
3,789,694	-				+2.9
3,789,694	-				+3.1
3,789,746	-				+2.4
3,789,750	+				-0.5
3,789,790	-				+3.0
3,789,817	-		CCNA_03636	0.12	+2.8
3,789,841	-		CCNA_03636	0.15	+2.6
3,789,866	-		CCNA_03636	0.17	+3.3
3,789,878	+		CCNA_03636	0.18	+1.0
3,789,878	+		CCNA_03636	0.18	+1.4
3,789,910	+		CCNA_03636	0.22	-0.3
3,789,924	-		CCNA_03636	0.23	+2.7
3,789,948	-		CCNA_03636	0.25	+2.0
3,790,047	+		CCNA_03636	0.35	+1.0
3,790,139	+		CCNA_03636	0.44	+1.1
3,790,181	-		CCNA_03636	0.48	+2.8
3,790,186	+		CCNA_03636	0.48	-0.4
3,790,186	+		CCNA_03636	0.48	-1.0
3,790,186	+		CCNA_03636	0.48	+1.5
3,790,194	-		CCNA_03636	0.49	+1.9
3,790,194	-		CCNA_03636	0.49	+1.9
3,790,194	-		CCNA_03636	0.49	+1.4
3,790,271	+		CCNA_03636	0.57	+0.5
3,790,278	+		CCNA_03636	0.57	-0.8
3,790,278	+		CCNA_03636	0.57	-1.0
3,790,286	-		CCNA_03636	0.58	+1.9
3,790,286	-		CCNA_03636	0.58	+1.8
3,790,288	+		CCNA_03636	0.58	-3.2
3,790,291	-		CCNA_03636	0.59	+1.6
3,790,296	-		CCNA_03636	0.59	+1.0
3,790,296	-		CCNA_03636	0.59	+1.7
3,790,299	+		CCNA_03636	0.59	+0.7
3,790,304	+		CCNA_03636	0.60	-0.5
3,790,322	-		CCNA_03636	0.62	+1.0
3,790,328	+		CCNA_03636	0.62	+2.8
3,790,336	+		CCNA_03636	0.63	-1.7
3,790,362	+		CCNA_03636	0.66	-0.3
3,790,423	-		CCNA_03636	0.72	+2.6
3,790,505	-		CCNA_03636	0.80	+1.3
3,790,550	+		CCNA_03636	0.84	+0.4
3,790,552	-		CCNA_03636	0.84	+1.4
3,790,667	-				+1.8
3,790,693	+				-0.5
3,790,711	-				+0.4
3,790,742	-				-0.1
3,790,793	+				+0.7
3,790,904	-		CCNA_03637	0.10	-2.3
3,790,941	+		CCNA_03637	0.13	+1.0
3,790,941	+		CCNA_03637	0.13	+0.1
3,790,941	+		CCNA_03637	0.13	-0.9
3,790,941	+		CCNA_03637	0.13	+0.7
3,790,955	-		CCNA_03637	0.14	-0.3
3,791,050	+		CCNA_03637	0.20	+0.5
3,791,056	-		CCNA_03637	0.20	-0.2
3,791,060	+		CCNA_03637	0.21	-1.6
3,791,069	+		CCNA_03637	0.21	+1.4
3,791,069	+		CCNA_03637	0.21	+0.1
3,791,077	-		CCNA_03637	0.22	+0.8
3,791,091	+		CCNA_03637	0.23	+0.0
3,791,101	+		CCNA_03637	0.23	+1.1
3,791,179	+		CCNA_03637	0.28	+1.1
3,791,187	-		CCNA_03637	0.29	+0.9
3,791,222	+		CCNA_03637	0.31	+1.2
3,791,247	+		CCNA_03637	0.33	+0.1
3,791,265	-		CCNA_03637	0.34	+0.6
3,791,284	-		CCNA_03637	0.35	-0.2
3,791,289	-		CCNA_03637	0.36	+0.5
3,791,290	+		CCNA_03637	0.36	+0.8
3,791,298	-		CCNA_03637	0.36	+1.7
3,791,298	-		CCNA_03637	0.36	+0.9
3,791,298	-		CCNA_03637	0.36	+1.8
3,791,298	-				+2.5
3,791,298	-		CCNA_03637	0.36	+1.4
3,791,306	-		CCNA_03637	0.37	+0.1
3,791,306	-		CCNA_03637	0.37	+1.0
3,791,332	+		CCNA_03637	0.38	+1.3
3,791,419	+		CCNA_03637	0.44	+0.4
3,791,443	-		CCNA_03637	0.46	-0.2
3,791,480	+		CCNA_03637	0.48	+0.3
3,791,480	+		CCNA_03637	0.48	+0.5
3,791,507	+		CCNA_03637	0.50	+0.1
3,791,517	+		CCNA_03637	0.50	+0.4
3,791,655	+		CCNA_03637	0.59	-0.5
3,791,677	+		CCNA_03637	0.61	-0.1
3,791,685	-		CCNA_03637	0.61	+1.6
3,791,685	-		CCNA_03637	0.61	+1.9